Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0101
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0568 + 18837195-18837203,18837694-18837741,18837853-188379...    29   3.8  
08_02_0594 + 19089094-19090049,19090673-19091162                       28   5.0  
05_03_0086 + 8279518-8280320,8280923-8281844                           28   5.0  
07_03_1240 + 25095472-25095942,25096021-25096314,25096563-250973...    27   8.8  
02_04_0224 - 21059328-21059888,21060388-21060462,21060715-210607...    27   8.8  

>10_08_0568 +
           18837195-18837203,18837694-18837741,18837853-18837912,
           18837986-18838155,18838297-18838369,18838529-18838594,
           18838685-18838768,18838950-18839027,18839122-18839205,
           18839562-18839641,18839791-18839848,18839933-18840235,
           18840361-18840531,18840972-18841204,18841303-18841705,
           18841961-18842212,18842293-18842790,18843073-18843170,
           18843314-18843413,18843653-18843798,18843912-18844068
          Length = 1056

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 25/77 (32%), Positives = 36/77 (46%)
 Frame = -3

Query: 370 LTYFDNFI*HFDTPALRWFHCGFVVIFLDYLHITVAVLADLEGPGAGSLAPLEPLAEFSA 191
           L Y DN I ++D  +LR        I +DY  +T   L  LE PG  +L     +  F+ 
Sbjct: 248 LIYRDNRIVNWDC-SLR---TAISDIEVDYCELTEETL--LEVPGCSTLVQFGVIINFAY 301

Query: 190 ALGAGIGSSVSVTSRQE 140
            L  G+G  +  T+R E
Sbjct: 302 PLEEGLGEIIVATTRIE 318


>08_02_0594 + 19089094-19090049,19090673-19091162
          Length = 481

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 79  WMISYKTMKSGSDCSRKMKKILGGW*QIPMNRCR 180
           WM+S  +MK  S+   +  K +GG+ Q+P ++C+
Sbjct: 140 WMVSTASMKYSSETGLQDLKNIGGYSQVP-SKCK 172


>05_03_0086 + 8279518-8280320,8280923-8281844
          Length = 574

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 343 HFDTPALRWFHCGFVVIFLDYLHITVAVLADLE 245
           HF  PA R F+   V++ L+YLH+   V  DL+
Sbjct: 261 HFSEPAAR-FYVAEVLLALEYLHMLGIVYRDLK 292


>07_03_1240 +
           25095472-25095942,25096021-25096314,25096563-25097383,
           25097466-25097636,25097716-25098016
          Length = 685

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = -2

Query: 545 VSHLQFGLLNCLSFPCCIQNR*LNNHV--FALS*IN----RMSFSSVI 420
           +  L  GLL C S  C I++R L N V  F  S +N    R SF+ V+
Sbjct: 516 IRKLDTGLLKCYSLLCWIESRRLGNQVGFFDPSMVNEVNLRQSFTEVV 563


>02_04_0224 -
           21059328-21059888,21060388-21060462,21060715-21060798,
           21060866-21061183,21061511-21061722,21061766-21062030
          Length = 504

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 319 WFHCGFVVIFLDYLHITVAVLADL-EGPGAG 230
           W+ C F    LDY    V  LA+L  GPGAG
Sbjct: 2   WYLCVFYHRLLDYRRPEVQSLAELFGGPGAG 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,937,290
Number of Sequences: 37544
Number of extensions: 299048
Number of successful extensions: 764
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)