Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0101
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50673| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_2296| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.1  
SB_5292| Best HMM Match : GlnE (HMM E-Value=1.7)                       28   6.8  
SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_50171| Best HMM Match : 7tm_1 (HMM E-Value=2.8026e-45)              27   9.0  
SB_37954| Best HMM Match : Taeniidae_ag (HMM E-Value=1.5)              27   9.0  

>SB_50673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 603 KSKKILVISKLWSIKWLKIGKSFTVWTFKL 514
           +SK +  I K W   ++K+GK+  +WT K+
Sbjct: 31  ESKILQRIQKPWEGNFVKVGKNVEIWTLKV 60


>SB_2296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +2

Query: 314 KPPKRRRVEMSDEVVEI 364
           K  KRRRV++SDEVVE+
Sbjct: 151 KNGKRRRVQLSDEVVEV 167


>SB_5292| Best HMM Match : GlnE (HMM E-Value=1.7)
          Length = 325

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/14 (78%), Positives = 14/14 (100%)
 Frame = +2

Query: 323 KRRRVEMSDEVVEI 364
           KRRRV++SDEVVE+
Sbjct: 168 KRRRVQLSDEVVEV 181


>SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1088

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 105  LHSFVRNHPQVMHSRHSSRFVP 40
            ++   RNH Q MH +HS+ + P
Sbjct: 956  IYLIARNHAQRMHQQHSNTYTP 977


>SB_50171| Best HMM Match : 7tm_1 (HMM E-Value=2.8026e-45)
          Length = 335

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 105 LHSFVRNHPQVMHSRHSSRFVP 40
           ++   RNH Q MH +HS+ + P
Sbjct: 203 IYLIARNHAQRMHQQHSNTYTP 224


>SB_37954| Best HMM Match : Taeniidae_ag (HMM E-Value=1.5)
          Length = 297

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +3

Query: 18  EHNNDKTLEQIGLNDGCALLVDDFLQNYEVRVRLQQEDEENSWRLVTDTDEPMPAP 185
           +HN+D+T ++I         +      YE  +  + E+EE S     D++ P P P
Sbjct: 46  KHNSDQTEDEIKAAFPVMAKLHKKKAEYEEAIGAKSENEEKSESSSGDSESPPPKP 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,003,647
Number of Sequences: 59808
Number of extensions: 332635
Number of successful extensions: 1301
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)