Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0101
         (609 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113361-1|AAM29366.1|  700|Drosophila melanogaster LD22577p pro...    46   3e-05
AF218864-1|AAF31704.1|  700|Drosophila melanogaster Smt3 activat...    46   3e-05
AF193553-1|AAF25197.1|  700|Drosophila melanogaster ubiquitin-li...    46   3e-05
AE014296-1376|AAF50484.2|  700|Drosophila melanogaster CG7528-PA...    46   3e-05
AE014134-668|AAF51067.1| 1131|Drosophila melanogaster CG10019-PA...    28   8.7  

>AY113361-1|AAM29366.1|  700|Drosophila melanogaster LD22577p
           protein.
          Length = 700

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = +3

Query: 9   GETEHNNDKTLEQIGLNDGCALLVDDFLQNYEVRV---RLQQEDEENSWRLVTDTDEPMP 179
           GETE N+ K L ++ + DG  L  DDF QNYE+ +       E +EN + +V D  +  P
Sbjct: 510 GETECNDGKLLSELNIVDGVILKCDDFFQNYELSIIISHFDAERDENLFEVVADASQLKP 569


>AF218864-1|AAF31704.1|  700|Drosophila melanogaster Smt3 activating
           enzyme 2 protein.
          Length = 700

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = +3

Query: 9   GETEHNNDKTLEQIGLNDGCALLVDDFLQNYEVRV---RLQQEDEENSWRLVTDTDEPMP 179
           GETE N+ K L ++ + DG  L  DDF QNYE+ +       E +EN + +V D  +  P
Sbjct: 510 GETECNDGKLLSELNIVDGVILKCDDFFQNYELSIIISHFDAERDENLFEVVADASQLKP 569


>AF193553-1|AAF25197.1|  700|Drosophila melanogaster ubiquitin-like
           protein activatingenzyme protein.
          Length = 700

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = +3

Query: 9   GETEHNNDKTLEQIGLNDGCALLVDDFLQNYEVRV---RLQQEDEENSWRLVTDTDEPMP 179
           GETE N+ K L ++ + DG  L  DDF QNYE+ +       E +EN + +V D  +  P
Sbjct: 510 GETECNDGKLLSELNIVDGVILKCDDFFQNYELSIIISHFDAERDENLFEVVADASQLKP 569


>AE014296-1376|AAF50484.2|  700|Drosophila melanogaster CG7528-PA
           protein.
          Length = 700

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = +3

Query: 9   GETEHNNDKTLEQIGLNDGCALLVDDFLQNYEVRV---RLQQEDEENSWRLVTDTDEPMP 179
           GETE N+ K L ++ + DG  L  DDF QNYE+ +       E +EN + +V D  +  P
Sbjct: 510 GETECNDGKLLSELNIVDGVILKCDDFFQNYELSIIISHFDAERDENLFEVVADASQLKP 569


>AE014134-668|AAF51067.1| 1131|Drosophila melanogaster CG10019-PA
           protein.
          Length = 1131

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 102 HSFVRNHPQVMHSRHSSRFVPEFCHC 25
           H   ++HP   H  H  ++ P++C C
Sbjct: 292 HHAQQHHPVAQHQHHPHQYGPQYCLC 317


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,877,926
Number of Sequences: 53049
Number of extensions: 501960
Number of successful extensions: 1255
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2503659279
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)