Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0101
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical ...    34   0.069
Z82062-5|CAB54319.4|  582|Caenorhabditis elegans Hypothetical pr...    33   0.21 
U12964-10|AAK93849.2|  140|Caenorhabditis elegans Hypothetical p...    27   7.9  

>AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7c protein.
          Length = 414

 Score = 34.3 bits (75), Expect = 0.069
 Identities = 17/34 (50%), Positives = 18/34 (52%)
 Frame = -3

Query: 304 FVVIFLDYLHITVAVLADLEGPGAGSLAPLEPLA 203
           F V F D +HI V    D   P AGS APL P A
Sbjct: 258 FKVYFFDSMHIVVEFYFDAMHPAAGSRAPLSPAA 291


>Z82062-5|CAB54319.4|  582|Caenorhabditis elegans Hypothetical
           protein W02A11.4 protein.
          Length = 582

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 9   GETEHNNDKTLEQIGLNDGCALLVDDFLQNYEVRVRLQQEDE--ENSWRLVTDTDEPMP 179
           G+T+    K L ++ + DG  L  DDF Q  E+++ +++ D    + + +     EP P
Sbjct: 484 GDTDDLLPKKLAEVSIEDGAILSCDDFQQEMEIKLFIKKGDRLAGDDFEVARSEKEPEP 542


>U12964-10|AAK93849.2|  140|Caenorhabditis elegans Hypothetical
           protein F26F4.9a protein.
          Length = 140

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 543 KSFTVWTFKLFIVSMLYSESLTQQSCIC 460
           K  T+  +K+FI S  YS SL Q S IC
Sbjct: 110 KVVTLIKYKIFIASKSYSFSLKQFSSIC 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,866,871
Number of Sequences: 27780
Number of extensions: 255580
Number of successful extensions: 652
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)