Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0099
         (642 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   0.40 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   0.40 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    25   0.70 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.1  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 51  SQNGNGSRAATSLYGADQRPASCNGLQNKKAHCWRR 158
           +  GN  +   + YG DQ+   C   + ++   WRR
Sbjct: 565 ADGGNSMKKCRARYGLDQQNQWCKPCRPREQLTWRR 600


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 51  SQNGNGSRAATSLYGADQRPASCNGLQNKKAHCWRR 158
           +  GN  +   + YG DQ+   C   + ++   WRR
Sbjct: 457 ADGGNSMKKCRARYGLDQQNQWCKPCRPREQLTWRR 492


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +1

Query: 448 MHCYTVRRAN-SLTLKPSXASERSTRQSPPARPPLNA*TPGAWYP 579
           M+ Y+V     S T +P  A   ST  +  ++P      PG W P
Sbjct: 394 MNSYSVPEPTISTTPRPEWARPPSTPSADGSKPVQTTPKPGQWVP 438


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 562  PGAWYPMTTPA*YVTYLKARQTSPVRP 642
            P  W+  TT + + T    R+T+  RP
Sbjct: 1039 PSTWWSSTTTSPWWTTTTTRRTTTTRP 1065


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,436
Number of Sequences: 336
Number of extensions: 3178
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)