Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0099
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    27   2.3  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    27   2.3  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   9.3  
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        25   9.3  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    25   9.3  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   9.3  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    25   9.3  

>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 65  WIKSSNISLWGRSTASQLQWITEQKSSLLATLDYLEQLRRKEPNTANSVD 214
           W K + IS           W TE+       LD L Q  +KE N + S++
Sbjct: 566 WEKRARISRSKEEARQFTIWKTEETQRRFHKLDILRQSLKKEENVSESLN 615


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 167 LEQLRRKEPNTANSVDISQRWQEITVKTQHYAK 265
           +  L  +E  T  S +++QRW+      +HYAK
Sbjct: 277 IRPLSEEEQGTKLSKEVAQRWEYEQTLLKHYAK 309


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -3

Query: 397 RRDGLLRSDRSPHIASVPDAVSTFPAPVDCAQSVLPVTSRY 275
           R   L R+D + HI  VP    T         S + V SRY
Sbjct: 443 RSPSLRRADSTSHIIKVPHLPDTSVKTAKTGASEIDVLSRY 483


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 161 DYLEQLRRKEPNTANSVDISQR 226
           +Y+EQ  + +PN+ N+VD  +R
Sbjct: 17  EYVEQAIQNDPNSLNAVDDDKR 38


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 346 PDAVSTFPAPVDCAQSVLPVTSRYVXSFGVV 254
           P   STFP    C Q++LP+  + +    VV
Sbjct: 153 PSNSSTFPISDSCKQALLPLPGKQINVRSVV 183


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 490 KPSXASERSTRQSPPARPP 546
           KPS +  RS   +PP  PP
Sbjct: 257 KPSESPRRSVSSTPPVHPP 275


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 63  NGSRAATSLYGADQRPASCNGLQNKKAHCWRRWITSNSYAGKNPIQ 200
           N ++ A  ++GA    A  + L    A  + +  +SNS+ G NP+Q
Sbjct: 198 NNNQQANDIFGAPTTSAFTSQLN---ASPFSQNTSSNSFTGSNPVQ 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,208
Number of Sequences: 5004
Number of extensions: 53181
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)