Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0099
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0583 + 20810976-20812028,20812727-20812882,20813029-20813415 29 2.4
09_02_0024 + 3084891-3086165 29 2.4
06_01_1007 + 7846266-7846526,7848368-7848420,7849231-7849432,784... 29 3.1
06_03_0791 - 24641350-24641418,24641684-24641965,24642318-246425... 28 5.5
12_01_0037 - 305940-306520,306627-306759,306830-307020,307228-30... 27 9.6
09_03_0080 + 12149885-12150842,12150936-12151007,12151129-121513... 27 9.6
09_02_0053 - 3665202-3665900,3666109-3666359,3666612-3666938,366... 27 9.6
08_02_0911 + 22530370-22530497,22531083-22531126,22531224-225312... 27 9.6
06_02_0060 - 11026885-11026929,11027732-11027756,11027886-110279... 27 9.6
01_06_0349 - 28613059-28614240 27 9.6
01_01_0034 - 269356-270333,270809-270897,273621-273957 27 9.6
>12_02_0583 + 20810976-20812028,20812727-20812882,20813029-20813415
Length = 531
Score = 29.5 bits (63), Expect = 2.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 603 YISCRSGHWVPCPW 562
+I C GHW PC W
Sbjct: 483 HIPCYGGHWTPCAW 496
>09_02_0024 + 3084891-3086165
Length = 424
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +2
Query: 71 KSSNISLWGRSTASQL---QWITEQKSSLLATLDYLEQLRRKE 190
+ N+ LW RS+ S W+ +++ SLL YL++LR +E
Sbjct: 302 QEQNLQLWVRSSGSGTINGGWLLKKEISLLHQFGYLKKLRSEE 344
>06_01_1007 +
7846266-7846526,7848368-7848420,7849231-7849432,
7849526-7849609,7850005-7850188,7850605-7850741,
7850875-7850939,7851093-7851762
Length = 551
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 514 FAHWRXWASKLKNLPAGRCNN 452
F H R WA L +LP G C+N
Sbjct: 275 FQHHRLWAPVLSDLPLGLCSN 295
>06_03_0791 -
24641350-24641418,24641684-24641965,24642318-24642537,
24642657-24642776,24643056-24643132,24643220-24643339,
24644121-24644186,24644265-24644479,24645450-24645582,
24646562-24646708,24647301-24647596,24648222-24648319,
24648425-24648471,24649340-24649449,24649663-24649735,
24650795-24650899
Length = 725
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 355 LYGANGQTSTTHRGGKKISI*RLSPACTAGVMHCYTVRRANSLTLK 492
LY N + ++ +SI RLSP V +C+ +R+ + LK
Sbjct: 469 LYHLNEEMRLSYLAQDLVSIDRLSPQAWCAVGNCFALRKDHETALK 514
>12_01_0037 -
305940-306520,306627-306759,306830-307020,307228-307508,
307668-307790,308240-308339,308451-308544
Length = 500
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -3
Query: 601 HIMPEWSLGTMPLAFTRLMAVVLAGIAAYFA 509
H++P W++ +P+A +A V I +F+
Sbjct: 144 HLVPRWAIYALPVAGVLFIAAVATAIYVFFS 174
>09_03_0080 +
12149885-12150842,12150936-12151007,12151129-12151346,
12153607-12153830,12154004-12154592
Length = 686
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 81 TSLYGADQRPASCNGLQNK--KAHCWRRWITSNSYAGKNPI 197
T L G A+ +G + + KA W R ++S S A KNP+
Sbjct: 330 TFLIGCKAGTAASDGSEKRVTKAITWNRSLSSRSSASKNPL 370
>09_02_0053 -
3665202-3665900,3666109-3666359,3666612-3666938,
3667017-3667242,3667328-3667846,3668789-3668863,
3668963-3669052,3669142-3669222,3672176-3672222,
3672620-3672685,3673834-3673930,3673983-3674046,
3674160-3674278,3674448-3674563,3676675-3676708
Length = 936
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 510 AKYAAIPASTTAIKRVNARGMVPNDHSGMICNIPKSTP 623
A AA+ A+T+ + + G+ PN S C PK+ P
Sbjct: 789 AATAALNAATSQVSSSHTSGLKPNKKSFKKCGKPKTLP 826
>08_02_0911 +
22530370-22530497,22531083-22531126,22531224-22531267,
22531428-22531946,22532032-22532257,22532336-22532662,
22532915-22533165,22533374-22534072
Length = 745
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 510 AKYAAIPASTTAIKRVNARGMVPNDHSGMICNIPKSTP 623
A AA+ A+T+ + + G+ PN S C PK+ P
Sbjct: 598 AATAALNAATSQVSSSHTSGLKPNKKSFKKCGKPKTLP 635
>06_02_0060 -
11026885-11026929,11027732-11027756,11027886-11027992,
11028023-11028103,11028301-11028405,11031495-11031762,
11031854-11032056
Length = 277
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 382 LRSDRSPHIASVPDAVSTFPAPVDCAQSVLPVTSRYVXSFGVVLR 248
L +D + + AS PDA S+ P P D +V +F VV +
Sbjct: 27 LLADWNSYAASRPDASSSSPLPFDIEAAVRSANDTVSGTFSVVTK 71
>01_06_0349 - 28613059-28614240
Length = 393
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 596 HAGVVIGYHAPGVYAFNGGRAGGDCRVLRS 507
HAG V+G++ A + G+ DC+++RS
Sbjct: 297 HAGDVVGFYRSAASAGDDGKLFIDCKLVRS 326
>01_01_0034 - 269356-270333,270809-270897,273621-273957
Length = 467
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 114 SCNGLQNKKAHCWRRWITSNSYAGKNPIQQIALILVNAGRKL 239
SC + AH WR W+ S + ++ L VN R+L
Sbjct: 258 SCTSFEALAAHVWRAWVLSLAPPPPPDMRVKLLFSVNVRRRL 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,946,686
Number of Sequences: 37544
Number of extensions: 425692
Number of successful extensions: 1283
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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