Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0099
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for...    34   0.099
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    34   0.099
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    34   0.099
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei...    34   0.099
Z79755-5|CAB02110.2|  244|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z82280-7|CAB05268.3|  304|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AC024824-2|AAK85502.1|  740|Caenorhabditis elegans Hypothetical ...    28   6.5  

>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
            protein.
          Length = 4280

 Score = 33.9 bits (74), Expect = 0.099
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 457  YTVR-RANSLTLKPSXASERSTRQSPPARPPLN 552
            Y VR RA +  L P    E ST Q PP+ PPLN
Sbjct: 1989 YEVRVRARTTELGPEETKEVSTEQQPPSSPPLN 2021


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
            protein.
          Length = 4450

 Score = 33.9 bits (74), Expect = 0.099
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 457  YTVR-RANSLTLKPSXASERSTRQSPPARPPLN 552
            Y VR RA +  L P    E ST Q PP+ PPLN
Sbjct: 1989 YEVRVRARTTELGPEETKEVSTEQQPPSSPPLN 2021


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
            805, isoform b protein.
          Length = 4450

 Score = 33.9 bits (74), Expect = 0.099
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 457  YTVR-RANSLTLKPSXASERSTRQSPPARPPLN 552
            Y VR RA +  L P    E ST Q PP+ PPLN
Sbjct: 1989 YEVRVRARTTELGPEETKEVSTEQQPPSSPPLN 2021


>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
            805, isoform a protein.
          Length = 4280

 Score = 33.9 bits (74), Expect = 0.099
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 457  YTVR-RANSLTLKPSXASERSTRQSPPARPPLN 552
            Y VR RA +  L P    E ST Q PP+ PPLN
Sbjct: 1989 YEVRVRARTTELGPEETKEVSTEQQPPSSPPLN 2021


>Z79755-5|CAB02110.2|  244|Caenorhabditis elegans Hypothetical
           protein F43G9.8 protein.
          Length = 244

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 286 LLEGQIERNQQALEMLKPHQXPTLYGANGQTSTTHRGGKKI 408
           +LEG     +    +LKP Q  T    N +T +TH G +KI
Sbjct: 119 VLEGNEMLMKHRARLLKPTQKRTTKDGNSETPSTHDGTRKI 159


>Z82280-7|CAB05268.3|  304|Caenorhabditis elegans Hypothetical
           protein R05A10.7 protein.
          Length = 304

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -3

Query: 289 VTSRYVXSFGVVLRFHSNFLPALTNINAICCIGFFPA*LFEVIQRRQQ 146
           + S Y      VL FHSNF    T++     +G+FP    E+++R++Q
Sbjct: 174 LNSNYSSIVSSVLAFHSNFAVLNTDV-----LGYFPTNSMELLKRQRQ 216


>AC024824-2|AAK85502.1|  740|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.2 protein.
          Length = 740

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 469 RANSLTLKPSXASERSTRQSPPARPP 546
           + +S T+ PS  + RST  S P+RPP
Sbjct: 329 QGSSRTMSPSPRNIRSTTPSVPSRPP 354


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,084,586
Number of Sequences: 27780
Number of extensions: 318892
Number of successful extensions: 896
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)