Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0099
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.12 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.27 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = -1

Query: 474 CPPDGVTMHYACSAGRR*SSDRNLFTAAMGC*GLTVRPI*RRXLM 340
           C  D       C AG +  +DR   T A+ C GL V  I RR  M
Sbjct: 750 CDFDACDCEMTCPAGCKCYNDRTWNTNAVDCSGLGVEEIPRRIPM 794


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 443 PAVQAGDNLQIEIFLPPRWVVE 378
           PA +     ++++ +PPRW+VE
Sbjct: 694 PAAEVRYTAKLQVKVPPRWIVE 715


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 440 AVQAGDNLQIEIFLPPRWVVE 378
           A +     ++ + +PPRW+VE
Sbjct: 691 AAEVSHTQRLVVHVPPRWIVE 711


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 40  VLNDLKTVMDQEQQHLSMGQINGQPVAM 123
           V+ND+KT +           I G+PVA+
Sbjct: 875 VINDVKTQITTNTPAKKATNIGGKPVAV 902


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 431 AGDNLQIEIFLPPRWVVE 378
           A  +  + + +PPRW++E
Sbjct: 667 ASHSTTLTVNVPPRWILE 684


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,923
Number of Sequences: 438
Number of extensions: 3725
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)