Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0099
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36780.1 68417.m05218 brassinosteroid signalling positive reg...    29   2.6  
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai...    29   3.5  
At1g67870.1 68414.m07750 glycine-rich protein contains non-conse...    28   4.6  
At1g59540.1 68414.m06694 kinesin motor protein-related similar t...    27   8.0  

>At4g36780.1 68417.m05218 brassinosteroid signalling positive
           regulator-related contains similarity to BZR1 protein
           [Arabidopsis thaliana] gi|20270971|gb|AAM18490
          Length = 169

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +3

Query: 306 AQSTGAGNVETASGTDAIWGERSDLNNPSRR*KDFDLKIISGLHCRRN 449
           A   G G   ++SG    W ER +     RR +    KI SGL  + N
Sbjct: 2   AAGGGGGGGGSSSGRTPTWKERENNKKRERRRRAITAKIYSGLRAQGN 49


>At1g44910.1 68414.m05146 FF domain-containing protein / WW
           domain-containing protein contains Pfam profiles
           PF01846: FF domain, PF00397: WW domain
          Length = 946

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -3

Query: 385 LLRSDRSPHIASVPDAVSTFPAPVDCAQSVL 293
           L++ +   H+A VP A +T+P PV+ + S++
Sbjct: 122 LVQPNSQMHVAGVPPAANTWPVPVNQSTSLV 152


>At1g67870.1 68414.m07750 glycine-rich protein contains
           non-consensus GG donor splice site at exon2; modeled to
           est match.
          Length = 279

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 530 RQHDRH*TRKRQGHGTQ*PLRHDM*HT*KHARHHQFG 640
           + HD H  + + GHG Q    H M H   H   HQ G
Sbjct: 137 QHHDIHGMQHQGGHGMQHQGMHGMQHQGGHGMQHQGG 173


>At1g59540.1 68414.m06694 kinesin motor protein-related similar to
           kinesin motor protein (kin2) GI:2062751 from (Ustilago
           maydis)
          Length = 823

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 104 TASQLQWITEQKSSLLATLDYLEQLRRKEPNTANSVD--ISQRWQEITVKTQH 256
           TA+ L   TE  +SLLATL+    +      T +S+D  +S  W+ + V  ++
Sbjct: 614 TANLLLGTTEITTSLLATLETQFSMIMDGQKTGSSIDHPLSDHWETLRVNLKN 666


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,385,568
Number of Sequences: 28952
Number of extensions: 301586
Number of successful extensions: 738
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)