Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0098
(671 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 29 0.46
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 28 1.1
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 3.3
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 27 3.3
SPAC4G9.10 |arg3||ornithine carbamoyltransferase Arg3|Schizosacc... 27 3.3
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 26 5.7
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 5.7
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2... 25 7.5
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 25 7.5
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 7.5
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 25 9.9
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 29.5 bits (63), Expect = 0.46
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 252 LYEAMNFHWSIVHYKKPPIPKSERGKARTQPEPELDPQVIGRYEGF 389
L E +N W I +Y+ PP + T P LDP++I GF
Sbjct: 386 LEEVLNHPWMIRNYEGPPASFAPERSPITLP---LDPEIIREMNGF 428
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -1
Query: 350 WLWLSPSFASF*LRNRRFLIMHNRP-VEIHS-FIKMSSCFRLNMISRAL 210
W W+ P F +F + +R I ++ + +HS ++ CF LN I L
Sbjct: 250 WTWIKPCFFNFVILLKRISIGDSQLFLHLHSRIVQTLCCFSLNFIYHGL 298
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/74 (24%), Positives = 33/74 (44%)
Frame = +1
Query: 307 FLSQKEAKLGLNQSQNWIPKLLEDMKDSRAAMVSLCNIFMNLTVLAPKIVDNSMLFNTLL 486
F+S +A N + + D A + LCN FM +V + + ++ N L
Sbjct: 518 FISDSDAYFLFNHGLELLNAVRSHECDGGAKTIYLCNHFMEKSVPGSVLANTKVILNRLK 577
Query: 487 KFIFNNLQN*RTSL 528
+N+++ +TSL
Sbjct: 578 ----SNIEHAKTSL 587
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +1
Query: 13 MREQIYALLPFMFSLANDSFHAYRSRKLAEKNKSEGEPLDDNSGLMGQ 156
+R+ A F F AND +H Y KL E EG+ +GL Q
Sbjct: 63 IRQNEQANTKFAFLHANDPYHPYYQHKLTEAR--EGKLKSHATGLSTQ 108
>SPAC4G9.10 |arg3||ornithine carbamoyltransferase
Arg3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +1
Query: 268 ISTGLLCIIRNLLFLSQKEAKLGLNQSQNWIPKLLEDMKDSRAAMVS 408
+ + + C+ N +FL + + +LG+N+S K++ M A V+
Sbjct: 70 VESAVSCLGGNAMFLGKDDIQLGVNESLYDTSKVISSMVSGIVARVN 116
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +1
Query: 310 LSQKEAKLGLNQSQNWIPKLLEDMKDS---RAAMVSLCNI 420
L +EA Q +N + + ED+KDS V LCN+
Sbjct: 544 LKFREASNTSEQGKNIVESIYEDLKDSNFFETTWVELCNL 583
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = -1
Query: 377 SSNNLGIQFWLWLS---PSFASF*LRN 306
SS LGI W W+ PSF+SF + N
Sbjct: 1059 SSFKLGITLWNWMMNQVPSFSSFLISN 1085
>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
2|||Manual
Length = 228
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 283 LCIIRNLLFLSQKEAKLGLNQSQNWIPKLLEDMKDSRAAMVSLC 414
LC++ + L+ + +N IPKLL+ +K + A V LC
Sbjct: 171 LCLMAHPHQLAYAALLISCCNDENTIPKLLDLIKSTDAFKVILC 214
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +1
Query: 364 KLLEDMKDSRAAMVSLCNIFMNLTVLAPKIVDNSMLFNTLLK 489
K L++ AA +LC+IFM++T + KI + + ++ +L+
Sbjct: 626 KKLQEEPTRSAAARALCDIFMSVTDIT-KIENGTKIYEEILQ 666
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -1
Query: 464 LLSTILGANTVRFMKMLHRLTMAALESFIS--SNNLGIQFWLWLS 336
+L+++L + VR K+ R ++ E S S+NL ++ W WL+
Sbjct: 325 MLTSVLTGDIVRSEKLRLRKIASSREGRNSDYSDNLWMEIWCWLT 369
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 494 MNLSRVLNSMLLSTILGANTVR 429
+++ R LNS + ILGA TVR
Sbjct: 745 LDMFRTLNSRVYQLILGAGTVR 766
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,639
Number of Sequences: 5004
Number of extensions: 57948
Number of successful extensions: 158
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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