Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0098
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270...    31   0.84 
03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,205...    29   2.6  
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848...    29   3.4  
05_05_0075 + 22209322-22210041,22210323-22210391,22210775-222111...    29   4.5  
07_03_1185 + 24645963-24646316,24647990-24648226,24649027-246491...    28   7.8  

>06_03_1067 -
           27326167-27326295,27326572-27326656,27326993-27327033,
           27327274-27327333,27327843-27327962,27328842-27329114,
           27329186-27329257,27329798-27329860,27329957-27330139,
           27330544-27330660,27330734-27332683,27332770-27332907,
           27333003-27333284,27334650-27335522
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 234 PKTGRHLYEAMNFHWSIVHYKKPPIPKSERGKA 332
           P+T R L +A+  H S+ H   PP P S   +A
Sbjct: 10  PRTARQLADALTAHLSLYHAATPPPPSSSSPRA 42


>03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,
            2053164-2053250,2053476-2053684,2054115-2054340,
            2054473-2054510,2054657-2054714,2055363-2055662,
            2055832-2055903,2055988-2056112,2056240-2056312,
            2056417-2056521
          Length = 1218

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 249  HLYEAMNFHWSIVHYKKPPIPKSERG 326
            H    +N+  SIVH ++PP+ K+ RG
Sbjct: 970  HFMPVLNYSVSIVHLEEPPLKKNIRG 995


>02_04_0179 + 20682852-20684510,20684593-20684661,20684741-20684809,
            20686779-20688206
          Length = 1074

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 267  NFHWSIVHYKKPPIPKSERGKARTQPEPELDPQVIGRYE 383
            N H+  V YK P + KSE+ K +T    EL P +I   E
Sbjct: 929  NLHYVEVVYKDPKVMKSEKIKHQTD-NVELQPHIIKEKE 966


>05_05_0075 +
           22209322-22210041,22210323-22210391,22210775-22211145,
           22212291-22212351,22212496-22213086
          Length = 603

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 336 TQPEPELDPQVIGRYEGFKSCHG*PVQHFHEPDSVGT 446
           +Q   ++  QV   Y G  + H   + H H+PD +GT
Sbjct: 492 SQMPHDISGQVSFAYNGLAAHHSIAMAHHHQPDLIGT 528


>07_03_1185 +
           24645963-24646316,24647990-24648226,24649027-24649170,
           24649296-24649427,24649524-24649811
          Length = 384

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 300 PPIPKSERGKARTQPEPELDPQ 365
           PP+P+S   + R+  +PEL PQ
Sbjct: 92  PPLPRSSSTRPRSLADPELHPQ 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,253,338
Number of Sequences: 37544
Number of extensions: 338945
Number of successful extensions: 826
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)