Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0098
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22322| Best HMM Match : Neurochondrin (HMM E-Value=2.9e-08)         44   1e-04
SB_11006| Best HMM Match : Viral_DNA_bi (HMM E-Value=3.9)              44   1e-04
SB_26253| Best HMM Match : REX1 (HMM E-Value=1.2)                      28   7.9  
SB_6283| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  

>SB_22322| Best HMM Match : Neurochondrin (HMM E-Value=2.9e-08)
          Length = 561

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 23/80 (28%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
 Frame = +1

Query: 1   ETTAMREQIYALLPFMFSLANDSFH----AYRSRKLAEKNKSEGEPLDDNSGLMGQIDLL 168
           E+ A+++++  +LP +  L+ ++      + +  + + K+ S   P   N     ++++L
Sbjct: 416 ESVALQDKVLKVLPILIKLSEETMDLDSPSPQQHQKSAKSVSFNLPEPLNQPAR-KVEIL 474

Query: 169 RLMLPALCHLAVEDKARDIM 228
           R +LPALCHL+ EDK+R I+
Sbjct: 475 RFLLPALCHLSAEDKSRHIL 494


>SB_11006| Best HMM Match : Viral_DNA_bi (HMM E-Value=3.9)
          Length = 352

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 23/80 (28%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
 Frame = +1

Query: 1   ETTAMREQIYALLPFMFSLANDSFH----AYRSRKLAEKNKSEGEPLDDNSGLMGQIDLL 168
           E+ A+++++  +LP +  L+ ++      + +  + + K+ S   P   N     ++++L
Sbjct: 203 ESVALQDKVLKVLPILIKLSEETMDLDSPSPQQHQKSAKSVSFNLPEPLNQPAR-KVEIL 261

Query: 169 RLMLPALCHLAVEDKARDIM 228
           R +LPALCHL+ EDK+R I+
Sbjct: 262 RFLLPALCHLSAEDKSRHIL 281


>SB_26253| Best HMM Match : REX1 (HMM E-Value=1.2)
          Length = 154

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/68 (27%), Positives = 37/68 (54%)
 Frame = +1

Query: 196 LAVEDKARDIMFNLKQEDIFMKL*ISTGLLCIIRNLLFLSQKEAKLGLNQSQNWIPKLLE 375
           +AV++K  ++ FNL Q+D   ++   T  L I+ + +   QKE +L  ++    I +L E
Sbjct: 54  MAVQEKDSEL-FNL-QKDFDQQMQAVTSALLILESDIRKEQKEIQLDADKKDYLIRELTE 111

Query: 376 DMKDSRAA 399
           +++    A
Sbjct: 112 ELRKRELA 119


>SB_6283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 16  REQIYALLPFMFSLANDSFHAYRSRKLAE 102
           RE+IYAL   M  L N++F  +   K AE
Sbjct: 339 REEIYALNKVMTQLENENFRKFMKEKEAE 367


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,232,866
Number of Sequences: 59808
Number of extensions: 404744
Number of successful extensions: 955
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)