Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0098
(671 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC024592-1|AAH24592.1| 729|Homo sapiens neurochondrin protein. 49 1e-05
AC004865-1|AAD05029.1| 730|Homo sapiens unknown protein. 49 1e-05
AB027514-2|BAA77831.1| 712|Homo sapiens neurochondrin-2 protein. 49 1e-05
AB027514-1|BAA77830.1| 729|Homo sapiens neurochondrin-1 protein. 49 1e-05
AB018740-1|BAA85385.2| 712|Homo sapiens neurochondrin-2 protein. 49 1e-05
AB018739-1|BAA85384.2| 729|Homo sapiens neurochondrin-1 protein. 49 1e-05
AB011179-1|BAA25533.1| 731|Homo sapiens KIAA0607 protein protein. 49 1e-05
>BC024592-1|AAH24592.1| 729|Homo sapiens neurochondrin protein.
Length = 729
Score = 49.2 bits (112), Expect = 1e-05
Identities = 44/169 (26%), Positives = 73/169 (43%)
Frame = +1
Query: 1 ETTAMREQIYALLPFMFSLANDSFHAYRSRKLAEKNKSEGEPLDDNSGLMGQIDLLRLML 180
ET+++R+++ LLPF+ A + + + G D LRL+L
Sbjct: 406 ETSSLRKEVCQLLPFLVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGDALRLLL 465
Query: 181 PALCHLAVEDKARDIMFNLKQEDIFMKL*ISTGLLCIIRNLLFLSQKEAKLGLNQSQNWI 360
P CHL VED R+I+ +K+ + LLC FL Q E + +
Sbjct: 466 PGWCHLTVEDGPREIL--IKEG--------APSLLC----KYFLQQWEL-TSPGHDTSVL 510
Query: 361 PKLLEDMKDSRAAMVSLCNIFMNLTVLAPKIVDNSMLFNTLLKFIFNNL 507
P +E + + C+IF+NL V AP ++ F +L+ + +L
Sbjct: 511 PDSVE------IGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSL 553
>AC004865-1|AAD05029.1| 730|Homo sapiens unknown protein.
Length = 730
Score = 49.2 bits (112), Expect = 1e-05
Identities = 44/169 (26%), Positives = 73/169 (43%)
Frame = +1
Query: 1 ETTAMREQIYALLPFMFSLANDSFHAYRSRKLAEKNKSEGEPLDDNSGLMGQIDLLRLML 180
ET+++R+++ LLPF+ A + + + G D LRL+L
Sbjct: 407 ETSSLRKEVCQLLPFLVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGDALRLLL 466
Query: 181 PALCHLAVEDKARDIMFNLKQEDIFMKL*ISTGLLCIIRNLLFLSQKEAKLGLNQSQNWI 360
P CHL VED R+I+ +K+ + LLC FL Q E + +
Sbjct: 467 PGWCHLTVEDGPREIL--IKEG--------APSLLC----KYFLQQWEL-TSPGHDTSVL 511
Query: 361 PKLLEDMKDSRAAMVSLCNIFMNLTVLAPKIVDNSMLFNTLLKFIFNNL 507
P +E + + C+IF+NL V AP ++ F +L+ + +L
Sbjct: 512 PDSVE------IGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSL 554
>AB027514-2|BAA77831.1| 712|Homo sapiens neurochondrin-2 protein.
Length = 712
Score = 49.2 bits (112), Expect = 1e-05
Identities = 44/169 (26%), Positives = 73/169 (43%)
Frame = +1
Query: 1 ETTAMREQIYALLPFMFSLANDSFHAYRSRKLAEKNKSEGEPLDDNSGLMGQIDLLRLML 180
ET+++R+++ LLPF+ A + + + G D LRL+L
Sbjct: 389 ETSSLRKEVCQLLPFLVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGDALRLLL 448
Query: 181 PALCHLAVEDKARDIMFNLKQEDIFMKL*ISTGLLCIIRNLLFLSQKEAKLGLNQSQNWI 360
P CHL VED R+I+ +K+ + LLC FL Q E + +
Sbjct: 449 PGWCHLTVEDGPREIL--IKEG--------APSLLC----KYFLQQWEL-TSPGHDTSVL 493
Query: 361 PKLLEDMKDSRAAMVSLCNIFMNLTVLAPKIVDNSMLFNTLLKFIFNNL 507
P +E + + C+IF+NL V AP ++ F +L+ + +L
Sbjct: 494 PDSVE------IGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSL 536
>AB027514-1|BAA77830.1| 729|Homo sapiens neurochondrin-1 protein.
Length = 729
Score = 49.2 bits (112), Expect = 1e-05
Identities = 44/169 (26%), Positives = 73/169 (43%)
Frame = +1
Query: 1 ETTAMREQIYALLPFMFSLANDSFHAYRSRKLAEKNKSEGEPLDDNSGLMGQIDLLRLML 180
ET+++R+++ LLPF+ A + + + G D LRL+L
Sbjct: 406 ETSSLRKEVCQLLPFLVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGDALRLLL 465
Query: 181 PALCHLAVEDKARDIMFNLKQEDIFMKL*ISTGLLCIIRNLLFLSQKEAKLGLNQSQNWI 360
P CHL VED R+I+ +K+ + LLC FL Q E + +
Sbjct: 466 PGWCHLTVEDGPREIL--IKEG--------APSLLC----KYFLQQWEL-TSPGHDTSVL 510
Query: 361 PKLLEDMKDSRAAMVSLCNIFMNLTVLAPKIVDNSMLFNTLLKFIFNNL 507
P +E + + C+IF+NL V AP ++ F +L+ + +L
Sbjct: 511 PDSVE------IGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSL 553
>AB018740-1|BAA85385.2| 712|Homo sapiens neurochondrin-2 protein.
Length = 712
Score = 49.2 bits (112), Expect = 1e-05
Identities = 44/169 (26%), Positives = 73/169 (43%)
Frame = +1
Query: 1 ETTAMREQIYALLPFMFSLANDSFHAYRSRKLAEKNKSEGEPLDDNSGLMGQIDLLRLML 180
ET+++R+++ LLPF+ A + + + G D LRL+L
Sbjct: 389 ETSSLRKEVCQLLPFLVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGDALRLLL 448
Query: 181 PALCHLAVEDKARDIMFNLKQEDIFMKL*ISTGLLCIIRNLLFLSQKEAKLGLNQSQNWI 360
P CHL VED R+I+ +K+ + LLC FL Q E + +
Sbjct: 449 PGWCHLTVEDGPREIL--IKEG--------APSLLC----KYFLQQWEL-TSPGHDTSVL 493
Query: 361 PKLLEDMKDSRAAMVSLCNIFMNLTVLAPKIVDNSMLFNTLLKFIFNNL 507
P +E + + C+IF+NL V AP ++ F +L+ + +L
Sbjct: 494 PDSVE------IGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSL 536
>AB018739-1|BAA85384.2| 729|Homo sapiens neurochondrin-1 protein.
Length = 729
Score = 49.2 bits (112), Expect = 1e-05
Identities = 44/169 (26%), Positives = 73/169 (43%)
Frame = +1
Query: 1 ETTAMREQIYALLPFMFSLANDSFHAYRSRKLAEKNKSEGEPLDDNSGLMGQIDLLRLML 180
ET+++R+++ LLPF+ A + + + G D LRL+L
Sbjct: 406 ETSSLRKEVCQLLPFLVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGDALRLLL 465
Query: 181 PALCHLAVEDKARDIMFNLKQEDIFMKL*ISTGLLCIIRNLLFLSQKEAKLGLNQSQNWI 360
P CHL VED R+I+ +K+ + LLC FL Q E + +
Sbjct: 466 PGWCHLTVEDGPREIL--IKEG--------APSLLC----KYFLQQWEL-TSPGHDTSVL 510
Query: 361 PKLLEDMKDSRAAMVSLCNIFMNLTVLAPKIVDNSMLFNTLLKFIFNNL 507
P +E + + C+IF+NL V AP ++ F +L+ + +L
Sbjct: 511 PDSVE------IGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSL 553
>AB011179-1|BAA25533.1| 731|Homo sapiens KIAA0607 protein protein.
Length = 731
Score = 49.2 bits (112), Expect = 1e-05
Identities = 44/169 (26%), Positives = 73/169 (43%)
Frame = +1
Query: 1 ETTAMREQIYALLPFMFSLANDSFHAYRSRKLAEKNKSEGEPLDDNSGLMGQIDLLRLML 180
ET+++R+++ LLPF+ A + + + G D LRL+L
Sbjct: 408 ETSSLRKEVCQLLPFLVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGDALRLLL 467
Query: 181 PALCHLAVEDKARDIMFNLKQEDIFMKL*ISTGLLCIIRNLLFLSQKEAKLGLNQSQNWI 360
P CHL VED R+I+ +K+ + LLC FL Q E + +
Sbjct: 468 PGWCHLTVEDGPREIL--IKEG--------APSLLC----KYFLQQWEL-TSPGHDTSVL 512
Query: 361 PKLLEDMKDSRAAMVSLCNIFMNLTVLAPKIVDNSMLFNTLLKFIFNNL 507
P +E + + C+IF+NL V AP ++ F +L+ + +L
Sbjct: 513 PDSVE------IGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSL 555
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,230,965
Number of Sequences: 237096
Number of extensions: 2027534
Number of successful extensions: 3956
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3956
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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