Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0098
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-22|AAK68478.3|  701|Caenorhabditis elegans Hypothetical...    29   4.0  
Z70783-11|CAA94860.2|  782|Caenorhabditis elegans Hypothetical p...    28   6.9  
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with...    28   6.9  
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with...    28   6.9  
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi...    28   6.9  
Z70038-4|CAA93881.1|  427|Caenorhabditis elegans Hypothetical pr...    27   9.2  
L23645-8|AAK26133.1|  282|Caenorhabditis elegans Peroxisome asse...    27   9.2  

>AC024776-22|AAK68478.3|  701|Caenorhabditis elegans Hypothetical
           protein Y41D4B.4 protein.
          Length = 701

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -1

Query: 479 VLNSMLLSTILGANTVRFMKMLHRLTMAALESFISSNNLGIQF 351
           VL +M L +  GA+  R+    HR+ + A+ES  ++ +LG+ +
Sbjct: 433 VLRTMELKS-RGADVERYRNQAHRILLEAVESMPNNTDLGVLY 474


>Z70783-11|CAA94860.2|  782|Caenorhabditis elegans Hypothetical
           protein ZK856.12 protein.
          Length = 782

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 25  IYALLPFMFSLANDSFHAYRS 87
           IYALLPF   + N+S HA++S
Sbjct: 101 IYALLPFTVLVFNNSQHAHKS 121


>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform a
           protein.
          Length = 2322

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 373 EDMKDSRAAMVSLCNIFMNLTVLAPKIVDNSMLFNTLLKFI 495
           +D+K  +    SLCN+  +L +     ++    FN+L K +
Sbjct: 311 DDVKLQKGVEESLCNVLKDLNLSNQSTMEKQAFFNSLAKIV 351


>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform b
           protein.
          Length = 2019

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 373 EDMKDSRAAMVSLCNIFMNLTVLAPKIVDNSMLFNTLLKFI 495
           +D+K  +    SLCN+  +L +     ++    FN+L K +
Sbjct: 311 DDVKLQKGVEESLCNVLKDLNLSNQSTMEKQAFFNSLAKIV 351


>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
           nonsense-mediated mRNA decay proteinSMG-1 protein.
          Length = 2322

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 373 EDMKDSRAAMVSLCNIFMNLTVLAPKIVDNSMLFNTLLKFI 495
           +D+K  +    SLCN+  +L +     ++    FN+L K +
Sbjct: 311 DDVKLQKGVEESLCNVLKDLNLSNQSTMEKQAFFNSLAKIV 351


>Z70038-4|CAA93881.1|  427|Caenorhabditis elegans Hypothetical
           protein ZK1067.5 protein.
          Length = 427

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = -1

Query: 608 ILFHFVCLLFEQK*SQYCQVSM*DKIFRDVLQFCKLLKMNLSRVLNSMLLSTI--LGANT 435
           +L+H    LF Q  S+YC VS+    F   L  C L  + L+     ++ +T+  + A  
Sbjct: 91  MLYHTNTYLF-QYISKYCSVSIVSHYFHFFLISCFLANLRLALFHLVLIFATVAYIIAGA 149

Query: 434 VRFMKMLHRLTMAALESF 381
             F K+ H+  +   +S+
Sbjct: 150 YLFTKIEHQAELDRYQSY 167


>L23645-8|AAK26133.1|  282|Caenorhabditis elegans Peroxisome
           assembly factor protein19 protein.
          Length = 282

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 294 KKPPIPKSERGKARTQPEPELDPQVIGRYE 383
           K+P + + +   A TQP PE DP  I  +E
Sbjct: 203 KQPELAEVQPVDAATQPAPEADPASIEHFE 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,457,175
Number of Sequences: 27780
Number of extensions: 320513
Number of successful extensions: 852
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)