Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0097
         (697 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    86   9e-16
UniRef50_Q7QBV3 Cluster: ENSANGP00000015407; n=3; Culicidae|Rep:...    33   5.1  
UniRef50_A7PYG8 Cluster: Chromosome chr12 scaffold_38, whole gen...    33   6.7  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 85.8 bits (203), Expect = 9e-16
 Identities = 38/40 (95%), Positives = 40/40 (100%)
 Frame = +1

Query: 112  STVFPERYDMSFFKRGLWRVLSGRQQLGSAPGIAEVHGQR 231
            STVFPERYDMSFFKRGLWRVLSGRQ+LGSAPGIAEVHG+R
Sbjct: 947  STVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR 986


>UniRef50_Q7QBV3 Cluster: ENSANGP00000015407; n=3; Culicidae|Rep:
           ENSANGP00000015407 - Anopheles gambiae str. PEST
          Length = 523

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = -2

Query: 639 YTQTLVNRTPQSTTHTVHEFHSYYTGLVEVARMQNMLF*YFMLILRYQI 493
           YTQ L +  P  TT+  H   S+ T +  V R+QN L+ +F ++ R Q+
Sbjct: 150 YTQYLAD-VPVYTTYLPHPASSFGTRMTFVERVQNTLYWWFDMLYRQQV 197


>UniRef50_A7PYG8 Cluster: Chromosome chr12 scaffold_38, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr12 scaffold_38, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 1313

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 21/69 (30%), Positives = 35/69 (50%)
 Frame = +3

Query: 405 RPQPEDPLGILNGF*WHSPNKYCRSSVTCKFGSVKLT*NIKTACFAYERLQPNRYNNYEI 584
           + +P +   ILN   WH PN    S++   +  + L   +K  CFAY  + P  Y  ++ 
Sbjct: 376 KAEPREWDDILNSEMWHLPNDGILSALKLSYCDLPLC--LK-RCFAYCSIFPTNY-EFDK 431

Query: 585 HELYVLWIA 611
            +L +LW+A
Sbjct: 432 EKLILLWMA 440


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 764,937,492
Number of Sequences: 1657284
Number of extensions: 16280483
Number of successful extensions: 35556
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35536
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)