Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0097
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    26   4.5  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    26   4.5  

>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 27  YYIFSRIFTTFYPVPFKLPICMEDL 101
           YYIFS   T+F  V + L I M  L
Sbjct: 366 YYIFSNFLTSFLQVSYGLSIDMSSL 390


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 519 NIKTA-CFAYERLQPNRYNNYEIHELYVL 602
           N++T   F  ER + NRYN+Y I  L+VL
Sbjct: 350 NVRTTQAFLGERQEVNRYNDY-IRNLFVL 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,166,658
Number of Sequences: 5004
Number of extensions: 69017
Number of successful extensions: 141
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)