Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0097
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27803| Best HMM Match : Pkinase (HMM E-Value=2.1e-08)               29   4.8  
SB_30272| Best HMM Match : GDI (HMM E-Value=0)                         28   8.3  

>SB_27803| Best HMM Match : Pkinase (HMM E-Value=2.1e-08)
          Length = 318

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 41  SNIHNFLSCTIQVTDMYGRPNTMPPRCFPSAMTCPSS 151
           SN H F+  +++ + MY   +TM P+  P+A    S+
Sbjct: 239 SNFHPFVPTSLKSSSMYNNKSTMLPKLPPAATAMTSA 275


>SB_30272| Best HMM Match : GDI (HMM E-Value=0)
          Length = 1199

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
 Frame = +3

Query: 450  WHSPNKYCRSSVTCKFGSVKLT*NIKTACFAYERLQPNRYN----NYEIHELY 596
            WH+ N    S VTC  GSV  +  ++  C    R     ++       IHELY
Sbjct: 949  WHTDNGNSVSHVTCDVGSVHFS-KVRMTCEGEARYVSRHHSGGLGGITIHELY 1000


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,912,745
Number of Sequences: 59808
Number of extensions: 524295
Number of successful extensions: 1092
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)