Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0097
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039035-2|AAB94162.1|  304|Caenorhabditis elegans Hypothetical ...    29   4.2  
AF100672-1|AAC68997.2|  334|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z69663-5|CAA93512.2| 1002|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z69661-8|CAA93496.2| 1002|Caenorhabditis elegans Hypothetical pr...    27   9.7  
DQ178241-1|ABA18180.1| 1010|Caenorhabditis elegans argonaute-lik...    27   9.7  

>AF039035-2|AAB94162.1|  304|Caenorhabditis elegans Hypothetical
           protein C53A3.1 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +1

Query: 538 LHTSDFNQTGIITMKFMNCMCCGLRRAVHKRLCVI*SLCYFNIG 669
           L   +  Q G+  ++ MNC    LRRAVH  L +  S+ Y NIG
Sbjct: 262 LELFNLTQLGLHEVQNMNCELIRLRRAVH-HLKLNKSIHYSNIG 304


>AF100672-1|AAC68997.2|  334|Caenorhabditis elegans Hypothetical
           protein W05E7.2 protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 563 VWLKSLVCKTCCFNILC*FY 504
           +W+ +LVC  CC+ +L  FY
Sbjct: 24  LWISTLVCILCCYIVLFPFY 43


>Z69663-5|CAA93512.2| 1002|Caenorhabditis elegans Hypothetical
           protein F48F7.1 protein.
          Length = 1002

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 6   RELISCIYYIFSRIFTTFYPV 68
           RE+ISC+   FS+ FT   PV
Sbjct: 185 REIISCLISAFSKYFTNIRPV 205


>Z69661-8|CAA93496.2| 1002|Caenorhabditis elegans Hypothetical
           protein F48F7.1 protein.
          Length = 1002

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 6   RELISCIYYIFSRIFTTFYPV 68
           RE+ISC+   FS+ FT   PV
Sbjct: 185 REIISCLISAFSKYFTNIRPV 205


>DQ178241-1|ABA18180.1| 1010|Caenorhabditis elegans argonaute-like
           protein.
          Length = 1010

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 6   RELISCIYYIFSRIFTTFYPV 68
           RE+ISC+   FS+ FT   PV
Sbjct: 193 REIISCLISAFSKYFTNIRPV 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,684,810
Number of Sequences: 27780
Number of extensions: 397182
Number of successful extensions: 866
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)