Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0097
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    26   0.39 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   6.4  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   6.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   8.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.5  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +3

Query: 225 ATVTTHHQVGVCSSANKGNKKKTNSYLLKKSLTVAVAFIYFCGRIIC*LRY 377
           +T+  +H    CS  N  ++KK   +L K+        I     I+C L +
Sbjct: 338 STIVRNHLNSTCSVTNSPHQKKLRFHLAKERKASTTLGIIMSAFIVCWLPF 388


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 258 IRPPDGEWLPLPMDFS 211
           IRPP  + LP+ +DF+
Sbjct: 1   IRPPSKQGLPVLVDFN 16


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 56  FLSCTIQVTDMYGRPNTMPPRCFPSAMTCPSS 151
           FL  T+  TD+  R  TMP R   +   C +S
Sbjct: 385 FLLXTLNYTDVXFRILTMPVRDAIAGTICENS 416


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 252 PPDGEWLPLPMDFSNARG 199
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = +2

Query: 86  MYGRPNTMPPRCFPSAMTCPSSNEACGE 169
           +Y R       C P  + CP  N   GE
Sbjct: 425 VYVREIAFSESCLPEEILCPHFNVTDGE 452


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 115 WRHGIRSSIHIGNLNGTG*KVVNIREK 35
           WR  I  +IH G++  T  + + + EK
Sbjct: 313 WRDRIYEAIHTGSVINTRGERIQLTEK 339


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 378 KGGHGSPLERPQPEDPLGILNGF*W 452
           K   G+P++   P + L + NG  W
Sbjct: 156 KDDKGNPIKDKYPNNWLSVFNGTGW 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,922
Number of Sequences: 438
Number of extensions: 5126
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)