Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0097
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37570.2 68415.m04608 expressed protein                             31   0.73 
At2g37570.1 68415.m04609 expressed protein                             31   0.73 
At5g15610.2 68418.m01827 proteasome family protein contains Pfam...    29   3.9  
At5g15610.1 68418.m01826 proteasome family protein contains Pfam...    29   3.9  
At5g02480.1 68418.m00181 expressed protein p                           27   9.0  
At1g58330.1 68414.m06635 transcription factor-related low simila...    27   9.0  

>At2g37570.2 68415.m04608 expressed protein
          Length = 351

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 250 WAYARLPTRAIKKKQIRIY*KNH*QWQSRLFIFAVE 357
           W +   P  A+ K Q+R Y   H +   RLF F+VE
Sbjct: 7   WVFKERPENALGKMQLRSYMNGHSRQGDRLFPFSVE 42


>At2g37570.1 68415.m04609 expressed protein
          Length = 494

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 250 WAYARLPTRAIKKKQIRIY*KNH*QWQSRLFIFAVE 357
           W +   P  A+ K Q+R Y   H +   RLF F+VE
Sbjct: 150 WVFKERPENALGKMQLRSYMNGHSRQGDRLFPFSVE 185


>At5g15610.2 68418.m01827 proteasome family protein contains Pfam
           domain, PF01399: PCI domain
          Length = 413

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 401 KWAPMATLITQSTNNSTAKINKRDCHC 321
           KW  +ATL+  S +  +AKI+++D  C
Sbjct: 52  KWLDLATLMVTSADLVSAKISEKDLEC 78


>At5g15610.1 68418.m01826 proteasome family protein contains Pfam
           domain, PF01399: PCI domain
          Length = 442

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 401 KWAPMATLITQSTNNSTAKINKRDCHC 321
           KW  +ATL+  S +  +AKI+++D  C
Sbjct: 52  KWLDLATLMVTSADLVSAKISEKDLEC 78


>At5g02480.1 68418.m00181 expressed protein p
          Length = 508

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 250 WAYARLPTRAIKKKQIRIY*KNH*QWQSRLFIFAVE 357
           WA+   P  A+ K Q+R Y   H +   R F F+ E
Sbjct: 169 WAFKDKPENALGKMQLRSYMNGHSRQGERPFPFSAE 204


>At1g58330.1 68414.m06635 transcription factor-related low
           similarity to tumor-related protein [Nicotiana glauca x
           Nicotiana langsdorffii] GI:688423, ocs-element binding
           factor 4 [Arabidopsis thaliana] GI:414613, mas-binding
           factor MBF3 [Solanum tuberosum] GI:13195751; supporting
           cDNA gi|6520153|dbj|AB028196.1|
          Length = 225

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 434 YAKWILWLRSFKWAPMATLITQSTNNSTA 348
           Y K ILW+  FK   +  LIT S N+ T+
Sbjct: 84  YEKLILWIGGFKPGMVFKLITTSVNDLTS 112


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,381,164
Number of Sequences: 28952
Number of extensions: 356378
Number of successful extensions: 743
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)