Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0059
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1054 + 30437468-30437763,30438647-30438779,30439099-304391...    29   3.4  
02_05_1312 + 35642687-35642923,35643712-35643831,35644468-356445...    29   4.5  
09_02_0119 - 4481522-4481580,4481615-4481718,4483132-4483231,448...    28   6.0  

>04_04_1054 +
           30437468-30437763,30438647-30438779,30439099-30439159,
           30439370-30439483,30439813-30439971,30440124-30440206,
           30440423-30440549,30440872-30440951,30441027-30441113,
           30441316-30441440,30441543-30441603,30441806-30441859,
           30441946-30442023,30442449-30442554,30442655-30442803,
           30442945-30443052
          Length = 606

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 192 CMLDINICLSNITITLHLLRLSFISALP 109
           C LDI  C S+   TL   R  F++ALP
Sbjct: 505 CKLDITACSSSQLTTLQNFRTDFLAALP 532


>02_05_1312 +
           35642687-35642923,35643712-35643831,35644468-35644534,
           35644673-35644694,35645053-35645152,35645282-35645414,
           35645483-35645517,35645708-35646409,35646789-35647121,
           35647337-35647601,35647665-35647999,35648105-35648177,
           35648271-35648356,35648479-35648598,35648674-35648741,
           35648825-35648882
          Length = 917

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/72 (22%), Positives = 34/72 (47%)
 Frame = -3

Query: 563 LWAPITTQHQVGRELVHLLSHYLEKQPIKISQASKFSSDFLHSSFTIQSILLWNALPLKI 384
           L+ P+ T  Q   +L+H   H+ + +P+ +S   K     L S  + + +++W A+  + 
Sbjct: 398 LYCPVATDIQ-DADLLHFQMHWAKGEPVVVSDTLK-----LTSGLSWEPMVMWRAVRERT 451

Query: 383 RSATTREAFKTK 348
           +     E F  +
Sbjct: 452 KGKAEDEQFAVR 463


>09_02_0119 -
           4481522-4481580,4481615-4481718,4483132-4483231,
           4483307-4483404,4483688-4483828,4485736-4485788,
           4486578-4486649,4487730-4487801,4487895-4487987,
           4489040-4489107,4489268-4489358
          Length = 316

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 521 LVHLLSHYLEKQPIKISQASKFSSDFLHSSFTIQS 417
           +V  +S  ++K+PI + + S F  DFL  SF +++
Sbjct: 234 MVAAVSCSVQKEPIVVGKPSSFLMDFLLKSFNLET 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,784,950
Number of Sequences: 37544
Number of extensions: 264287
Number of successful extensions: 529
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)