Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0059
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z68113-1|CAA92151.1|  321|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF016441-2|AAB65912.2|  417|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z73906-8|CAA98120.3|  511|Caenorhabditis elegans Hypothetical pr...    28   5.4  

>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/47 (27%), Positives = 28/47 (59%)
 Frame = +1

Query: 322  NSLRNSSRTFVLNASRVVADLILSGSAFHRRID*IVNEECKKSELNL 462
            NSL N S+   +  +   +DL+L+ + FH  I+  ++++  K++ N+
Sbjct: 1466 NSLHNESQVSEITEASDPSDLVLTSTTFHNVIEEKIDDDVTKTDSNV 1512


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/47 (27%), Positives = 28/47 (59%)
 Frame = +1

Query: 322  NSLRNSSRTFVLNASRVVADLILSGSAFHRRID*IVNEECKKSELNL 462
            NSL N S+   +  +   +DL+L+ + FH  I+  ++++  K++ N+
Sbjct: 1466 NSLHNESQVSEITEASDPSDLVLTSTTFHNVIEEKIDDDVTKTDSNV 1512


>Z68113-1|CAA92151.1|  321|Caenorhabditis elegans Hypothetical
           protein E03G2.1 protein.
          Length = 321

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 299 YLFIYVYIYDMYIFMVSIYLYI 234
           Y++IY+Y+Y +YIF+   +  I
Sbjct: 87  YIYIYIYVYGLYIFIAQSHKQI 108


>AF016441-2|AAB65912.2|  417|Caenorhabditis elegans Hypothetical
           protein M03F8.5 protein.
          Length = 417

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -1

Query: 472 RKRVNLVLTFYILHSLFSLFFYGMRSHSK*GRPLHVK-RLRRRFENCFSKS*QSHLIDNI 296
           R+ ++ ++   ++ SL  LF+   +SH      L+ K  L+  F N      Q+HL DN 
Sbjct: 4   RRTISALIQIVLITSLICLFYIVSQSH------LNFKPNLKLEFRNFSEPHRQAHLFDNY 57

Query: 295 CLYMY 281
           C + +
Sbjct: 58  CKFAW 62


>Z73906-8|CAA98120.3|  511|Caenorhabditis elegans Hypothetical
           protein D2030.8 protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 554 PITTQHQVGRELVHLLSHYLEKQPIKISQASKFSSDFLHSSFTIQSI 414
           P+TT++Q   EL+H  + +LEK         K +++ LH +    S+
Sbjct: 319 PLTTKNQTNIELLHCATEFLEK-----CDNGKHNNEILHQNLRAMSL 360


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,766,464
Number of Sequences: 27780
Number of extensions: 234576
Number of successful extensions: 474
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)