Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0058
         (728 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8MSF5 Cluster: GM16138p; n=12; Arthropoda|Rep: GM16138...    98   2e-19
UniRef50_Q28WM7 Cluster: GA10879-PA; n=1; Drosophila pseudoobscu...    61   2e-08
UniRef50_A7RHU7 Cluster: Predicted protein; n=2; Eumetazoa|Rep: ...    61   2e-08
UniRef50_Q20589 Cluster: Putative uncharacterized protein; n=2; ...    58   3e-07
UniRef50_Q9NDV2 Cluster: Ribonuclease precursor; n=1; Ceratitis ...    57   4e-07
UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    51   3e-05
UniRef50_Q9W286 Cluster: CG11269-PA; n=1; Drosophila melanogaste...    48   2e-04
UniRef50_O02142 Cluster: Putative uncharacterized protein; n=2; ...    41   0.036
UniRef50_A3EXS3 Cluster: Putative ribonuclease; n=1; Maconellico...    38   0.33 
UniRef50_Q0D1P4 Cluster: Predicted protein; n=1; Aspergillus ter...    36   1.3  
UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein F2...    34   3.1  
UniRef50_A2EQF7 Cluster: Putative uncharacterized protein; n=2; ...    33   7.2  
UniRef50_UPI00006CCA8E Cluster: hypothetical protein TTHERM_0028...    33   9.5  

>UniRef50_Q8MSF5 Cluster: GM16138p; n=12; Arthropoda|Rep: GM16138p -
           Drosophila melanogaster (Fruit fly)
          Length = 95

 Score = 97.9 bits (233), Expect = 2e-19
 Identities = 42/74 (56%), Positives = 55/74 (74%)
 Frame = +2

Query: 47  KLCGPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIXVEK 226
           K+CGPKLSLCGL++SVWGI+QL LMG+F+YI +VAL+EDLP +E+   HS+EDF     +
Sbjct: 2   KICGPKLSLCGLIISVWGIVQLVLMGLFFYINSVALIEDLPLEEEY--HSLEDFYAAANR 59

Query: 227 GYTLNAQXC*LRHC 268
            Y  NA  C +  C
Sbjct: 60  AYNQNAYNCWIAAC 73


>UniRef50_Q28WM7 Cluster: GA10879-PA; n=1; Drosophila
           pseudoobscura|Rep: GA10879-PA - Drosophila pseudoobscura
           (Fruit fly)
          Length = 94

 Score = 61.3 bits (142), Expect = 2e-08
 Identities = 29/68 (42%), Positives = 42/68 (61%)
 Frame = +2

Query: 50  LCGPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIXVEKG 229
           +CGPK S   L +S W +IQLTLMG+F+ + ++AL++DLP       HS+EDF    +  
Sbjct: 2   VCGPKCSFFCLFISAWAVIQLTLMGIFFLLNSMALIDDLPLTPIF--HSLEDFRTHADVT 59

Query: 230 YTLNAQXC 253
           Y + A  C
Sbjct: 60  YQVVAIRC 67


>UniRef50_A7RHU7 Cluster: Predicted protein; n=2; Eumetazoa|Rep:
           Predicted protein - Nematostella vectensis
          Length = 88

 Score = 61.3 bits (142), Expect = 2e-08
 Identities = 23/44 (52%), Positives = 36/44 (81%)
 Frame = +2

Query: 47  KLCGPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDE 178
           ++CGPKLS C  +LS+WG+I L L+GVF+  +++AL+ED+P D+
Sbjct: 3   RICGPKLSNCCFILSLWGVIMLLLLGVFFKTKSIALVEDIPKDK 46


>UniRef50_Q20589 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 95

 Score = 57.6 bits (133), Expect = 3e-07
 Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
 Frame = +2

Query: 44  CKLCGPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFD-EKNPPHSIED 205
           C L GPK+S   +V+SVWG+I L L+GVF+YI+AV L  DL F+     P S+ D
Sbjct: 5   CPLMGPKMSAFCMVMSVWGVIFLGLLGVFFYIQAVTLFPDLHFEGHGKVPSSVID 59


>UniRef50_Q9NDV2 Cluster: Ribonuclease precursor; n=1; Ceratitis
           capitata|Rep: Ribonuclease precursor - Ceratitis
           capitata (Mediterranean fruit fly)
          Length = 138

 Score = 57.2 bits (132), Expect = 4e-07
 Identities = 29/53 (54%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
 Frame = +2

Query: 89  SVWGIIQLTLM-GVFYYIRAVALLEDLPFDEKNPPHSIEDFVIXVEKGYTLNA 244
           SVWGIIQL LM G+F+YI +VAL+EDLP DE+   +S+E+F       Y  NA
Sbjct: 73  SVWGIIQLVLMMGLFFYINSVALIEDLPIDEEF--NSVEEFYTAATSAYNQNA 123


>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 51.2 bits (117), Expect = 3e-05
 Identities = 18/36 (50%), Positives = 26/36 (72%)
 Frame = -3

Query: 630 DDLWQYAGKNWMRKVEDRSLWRTMGEVYIQQWRDTG 523
           DDL + AG  WM+  +DRSLW+++GE ++QQW   G
Sbjct: 462 DDLVKVAGSTWMQAAQDRSLWKSLGEAFVQQWTSFG 497


>UniRef50_Q9W286 Cluster: CG11269-PA; n=1; Drosophila
           melanogaster|Rep: CG11269-PA - Drosophila melanogaster
           (Fruit fly)
          Length = 107

 Score = 48.4 bits (110), Expect = 2e-04
 Identities = 23/60 (38%), Positives = 34/60 (56%)
 Frame = +2

Query: 53  CGPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIXVEKGY 232
           CG K  L  L +S WG + L L+G+F+Y++++ LLE LP     P  S E F    ++ Y
Sbjct: 3   CGRKCCLFCLFMSAWGFLMLNLLGIFFYVQSLMLLESLPLPHHFP--SQEAFKEQADEAY 60


>UniRef50_O02142 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 93

 Score = 40.7 bits (91), Expect = 0.036
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +2

Query: 56  GPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSI-EDFVIXVEKGY 232
           GP  +   L L++WG + + ++G  +Y ++V L EDLP + K    S+  D      K Y
Sbjct: 3   GPMCTGIFLFLALWGTVFMAILGGLFYNQSVGLFEDLPKESKAMEKSLWADRTTNFNKLY 62

Query: 233 TLNAQXC 253
             NA  C
Sbjct: 63  QQNAYNC 69


>UniRef50_A3EXS3 Cluster: Putative ribonuclease; n=1;
           Maconellicoccus hirsutus|Rep: Putative ribonuclease -
           Maconellicoccus hirsutus (hibiscus mealybug)
          Length = 72

 Score = 37.5 bits (83), Expect = 0.33
 Identities = 21/50 (42%), Positives = 26/50 (52%)
 Frame = +2

Query: 119 MGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIXVEKGYTLNAQXC*LRHC 268
           MG FY + ++AL EDLP  E+ P  S E F      GY  NA  C +  C
Sbjct: 1   MGFFYKVHSLALAEDLPGLEE-PFESHEKFYSVANTGYDQNAYNCWIAAC 49


>UniRef50_Q0D1P4 Cluster: Predicted protein; n=1; Aspergillus
           terreus NIH2624|Rep: Predicted protein - Aspergillus
           terreus (strain NIH 2624)
          Length = 459

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 18/55 (32%), Positives = 31/55 (56%)
 Frame = +3

Query: 426 IMSVIKLCFYQLTI*VNIASYILLKLLNIVIVSLYLSTAGCKPLP*SATMNDPLP 590
           ++++I + FY L    ++ SY   K+++ V+  L L  +GC+ LP   T   PLP
Sbjct: 65  LLTIITVGFYTLLNWCSLGSYHTTKMISTVVTGLLLLASGCEALP---TNQTPLP 116


>UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein
           F28E10.3 [imported] - Caenorhabditis elegans; n=4;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           protein F28E10.3 [imported] - Caenorhabditis elegans -
           Strongylocentrotus purpuratus
          Length = 824

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 630 DDLWQYAGK-NWMRKVEDRSLWRTMGEVYIQQWRDTG 523
           D+L Q+ G+ NW ++  +R +W    E +I QW D G
Sbjct: 401 DELQQFWGQTNWHQQALNRGIWNHHAEAFILQWIDNG 437


>UniRef50_A2EQF7 Cluster: Putative uncharacterized protein; n=2;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 126

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +2

Query: 74  CGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIED 205
           C +V+SVWGI+ L +M + + I     + DL     NP H+ +D
Sbjct: 17  CYVVISVWGIVMLGIMAILFGIDKAGTIGDL-----NPHHTRKD 55


>UniRef50_UPI00006CCA8E Cluster: hypothetical protein TTHERM_00283880;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00283880 - Tetrahymena thermophila SB210
          Length = 1799

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
 Frame = +3

Query: 408  NRLLYVIMSVIKLCFYQLTI*VNIASYILLKLLNIVIVSLYLSTAGCKPLP*SATMNDPL 587
            +R LYVI  V      +L I  NIA YI L LL I+   LY  +         + +N PL
Sbjct: 1142 SRRLYVIKVVRSKKLSKLFITANIAGYIGLLLLLIMTSGLYAVSYSYFQDQYYSMVNMPL 1201

Query: 588  --PFASNFFQHIATSHQLHLFKQNF 656
                 S+F   +  S+Q+ L+K N+
Sbjct: 1202 FNDMYSSFSHLMKCSNQILLYKNNY 1226


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 692,347,495
Number of Sequences: 1657284
Number of extensions: 12863087
Number of successful extensions: 25375
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 24794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25363
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)