Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0058
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   6.3  
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    26   6.3  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    26   6.3  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    25   8.4  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 543  GCKPLP*SATMNDPLPFASNFFQHIATSHQL 635
            GC PLP  A   D  P     FQ +  +H L
Sbjct: 2286 GCAPLPIFALTADMQPTMETQFQEVGITHYL 2316


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 112 DVDGRLLLYSSCRSAGGSTI**EKSASFYRRLRHXXGKR 228
           D+D R  LYS+   +GGST+       F   LR   GK+
Sbjct: 291 DIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKK 329


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 608 EKIGCER*RIVHCGGLWERFTSSSGEIQ 525
           E+I C+  R ++CGG W    +    IQ
Sbjct: 52  ERIPCDPVRFMYCGGTWNGIRNHLDYIQ 79


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 77  HKATVLVHTVCSPFCTI 27
           +K   L HT+C+PF T+
Sbjct: 878 YKGNALGHTICAPFTTL 894


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,989,443
Number of Sequences: 5004
Number of extensions: 59252
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)