Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0058
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1133 - 30614901-30615389,30615823-30615933,30616113-306161...    30   2.2  

>03_05_1133 -
           30614901-30615389,30615823-30615933,30616113-30616178,
           30616347-30616406,30616493-30616801,30616960-30617108,
           30617200-30617269,30617370-30617494,30617516-30617573,
           30618176-30618370,30618585-30618857,30618950-30619120,
           30619203-30619333,30619423-30619582,30619712-30619900,
           30620023-30620118,30620381-30620611,30620715-30620853,
           30620903-30621057,30621160-30621378
          Length = 1131

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 2   KDFDYLAQKLYKMGCKLCGPKLSLCGLVLSVW 97
           +D+D +A    +MG   C   + +CGLV S+W
Sbjct: 109 RDYDQIANLAKRMGLYRCR-NIEICGLVFSLW 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,225,329
Number of Sequences: 37544
Number of extensions: 343425
Number of successful extensions: 663
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)