Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0058
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47643| Best HMM Match : Peptidase_C48 (HMM E-Value=1.5e-05)         29   5.1  
SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)            28   6.7  
SB_55294| Best HMM Match : Paxillin (HMM E-Value=5.5)                  28   6.7  

>SB_47643| Best HMM Match : Peptidase_C48 (HMM E-Value=1.5e-05)
          Length = 504

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +3

Query: 141 ELSLCWRIYHLMRKIRLILSKTSSLXWKKDIP*MHXXVDCGIVVLDYTGCIWT 299
           E ++C +++H+++K    L   S+     D+P     +DCG+ +L Y  C+ T
Sbjct: 222 EAAMC-KMWHVLKKADSSLDIASNKPG--DLPQKANGIDCGVFLLMYARCLAT 271


>SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)
          Length = 464

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
 Frame = +2

Query: 329 LVCNIEGVVIFAVNSIPL*NCFFFCQKQVAICNYVCN*----VVFLSIDNIGKHS*LHIT 496
           ++C ++ V    +  + L      CQ Q+  C  +C      V+FLSI     H  L IT
Sbjct: 41  VLCQLQLVTCIVLCQLQLFTPIVLCQLQLFTCIVLCQQLFTRVLFLSITIAHAHRSLLIT 100

Query: 497 QTIKHRHRQPVSLHCWM*TSPIVRHNERSSTFRI 598
               HR      +H     S  + H  RS +  I
Sbjct: 101 IVHVHRSLSITIVHVHRSLSITIVHAHRSLSITI 134


>SB_55294| Best HMM Match : Paxillin (HMM E-Value=5.5)
          Length = 161

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +3

Query: 579 DPLPFASNFFQHIA--TSHQLHLFKQNF 656
           DPLP   ++FQHI   T  ++H   QNF
Sbjct: 53  DPLPTGGSYFQHITTETGAKVHTEYQNF 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,330,981
Number of Sequences: 59808
Number of extensions: 409582
Number of successful extensions: 828
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)