Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0058
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68227-10|CAA92515.1|   95|Caenorhabditis elegans Hypothetical p...    58   8e-09
U97593-4|AAB52877.2|   93|Caenorhabditis elegans Hypothetical pr...    41   0.001
U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>Z68227-10|CAA92515.1|   95|Caenorhabditis elegans Hypothetical
           protein F49C12.12 protein.
          Length = 95

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
 Frame = +2

Query: 44  CKLCGPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFD-EKNPPHSIED 205
           C L GPK+S   +V+SVWG+I L L+GVF+YI+AV L  DL F+     P S+ D
Sbjct: 5   CPLMGPKMSAFCMVMSVWGVIFLGLLGVFFYIQAVTLFPDLHFEGHGKVPSSVID 59


>U97593-4|AAB52877.2|   93|Caenorhabditis elegans Hypothetical
           protein C46G7.1 protein.
          Length = 93

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +2

Query: 56  GPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSI-EDFVIXVEKGY 232
           GP  +   L L++WG + + ++G  +Y ++V L EDLP + K    S+  D      K Y
Sbjct: 3   GPMCTGIFLFLALWGTVFMAILGGLFYNQSVGLFEDLPKESKAMEKSLWADRTTNFNKLY 62

Query: 233 TLNAQXC 253
             NA  C
Sbjct: 63  QQNAYNC 69


>U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical
           protein C24A8.1 protein.
          Length = 582

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 374 IPL*NCFFFCQKQVAICNYVCN*VVFLSIDNIGKHS*LHITQTIKHRHR 520
           +PL  C+F+C   VA        +V +SID +   +     +T+KHR R
Sbjct: 57  LPLFVCYFYCVLDVAASTSSIIHLVLISIDRLVAATKPAEYKTVKHRKR 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,285,946
Number of Sequences: 27780
Number of extensions: 323215
Number of successful extensions: 654
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)