Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0058
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ...    29   3.2  
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ...    29   3.2  
At5g48380.1 68418.m05978 leucine-rich repeat family protein / pr...    27   9.6  
At4g28570.1 68417.m04087 alcohol oxidase-related low similarity ...    27   9.6  

>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
            putative similar to SP|P22082 Transcription regulatory
            protein SNF2 (SWI/SNF complex component SNF2)
            {Saccharomyces cerevisiae}; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain
          Length = 2193

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 92   VWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIXVEK 226
            +W ++ L L  VF   +A       PF ++ P H+IED  +  EK
Sbjct: 1148 LWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEK 1192


>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
            putative similar to SP|P22082 Transcription regulatory
            protein SNF2 (SWI/SNF complex component SNF2)
            {Saccharomyces cerevisiae}; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain
          Length = 2192

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 92   VWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIXVEK 226
            +W ++ L L  VF   +A       PF ++ P H+IED  +  EK
Sbjct: 1147 LWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEK 1191


>At5g48380.1 68418.m05978 leucine-rich repeat family protein /
           protein kinase family protein contains protein kinase
           domain, Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 620

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 541 LDVNLSHSPPQ*TILYLSHPIFSSILPQVIS-XTYLNKTFKLF*NSF 678
           L  N+S   P  TIL LS+  FS  +P +IS  T+LN T  L  N F
Sbjct: 116 LPANISTLIPLVTILDLSYNSFSGEIPMLISNITFLN-TLMLQHNQF 161


>At4g28570.1 68417.m04087 alcohol oxidase-related low similarity to
           long chain fatty alcohol oxidase from Candida cloacae
           [GI:6983581], Candida tropicalis [GI:6983594]
          Length = 748

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 157 QQSDSSNIIKDAHQRQLNDAPYAQN*ATKRQFWSTQFAAH 38
           Q+     I K+A +  L++        TK ++W+T F+AH
Sbjct: 640 QKMKCEAITKEAMEEFLDEVDAVGGVGTKGEYWTTYFSAH 679


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,186,984
Number of Sequences: 28952
Number of extensions: 293493
Number of successful extensions: 570
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)