Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0057
         (693 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q24691 Cluster: Manirer-2 protein; n=12; Eumetazoa|Rep:...    49   9e-05
UniRef50_Q9NKW3 Cluster: Transposase; n=7; Obtectomera|Rep: Tran...    43   0.008
UniRef50_UPI0000F33057 Cluster: UPI0000F33057 related cluster; n...    37   0.54 
UniRef50_Q9FNN4 Cluster: Arabidopsis thaliana genomic DNA, chrom...    35   1.6  
UniRef50_Q53H47 Cluster: Histone-lysine N-methyltransferase SETM...    35   1.6  
UniRef50_Q23702 Cluster: Transposase; n=10; Bilateria|Rep: Trans...    34   3.8  
UniRef50_Q1VLR3 Cluster: Putative uncharacterized protein; n=1; ...    33   6.6  
UniRef50_Q2AGU1 Cluster: Regulatory protein, LacI:Periplasmic bi...    33   8.8  

>UniRef50_Q24691 Cluster: Manirer-2 protein; n=12; Eumetazoa|Rep:
           Manirer-2 protein - Dugesia tigrina (Planarian)
          Length = 365

 Score = 49.2 bits (112), Expect = 9e-05
 Identities = 23/47 (48%), Positives = 30/47 (63%)
 Frame = +1

Query: 553 YCVELRAMI*KLVEKQPQPMNRSSPLLLRDNVRSHRARETVLALHKL 693
           YC +L  M+ KL  KQP+  NR +P+LL DN R H A+ TV  L +L
Sbjct: 214 YCSQLDDMMEKLAIKQPKMFNRLTPILLHDNARPHSAKNTVAKLQQL 260


>UniRef50_Q9NKW3 Cluster: Transposase; n=7; Obtectomera|Rep:
           Transposase - Antheraea pernyi (Chinese oak silk moth)
          Length = 165

 Score = 42.7 bits (96), Expect = 0.008
 Identities = 20/33 (60%), Positives = 22/33 (66%)
 Frame = +1

Query: 553 YCVELRAMI*KLVEKQPQPMNRSSPLLLRDNVR 651
           YC EL  M+ KL   QP  +NRSSPLLL DN R
Sbjct: 101 YCEELNTMMEKLAHLQPALVNRSSPLLLHDNAR 133


>UniRef50_UPI0000F33057 Cluster: UPI0000F33057 related cluster; n=6;
           Bos taurus|Rep: UPI0000F33057 UniRef100 entry - Bos
           Taurus
          Length = 330

 Score = 36.7 bits (81), Expect = 0.54
 Identities = 19/47 (40%), Positives = 27/47 (57%)
 Frame = +1

Query: 553 YCVELRAMI*KLVEKQPQPMNRSSPLLLRDNVRSHRARETVLALHKL 693
           Y  ++  M  KL   QP  +NR  P+LL DN R H A+ T+  L++L
Sbjct: 214 YAQQIDEMHRKLRRLQPALVNRKGPILLHDNSRLHLAQPTLQKLNEL 260


>UniRef50_Q9FNN4 Cluster: Arabidopsis thaliana genomic DNA,
           chromosome 5, P1 clone:MAH20; n=9; Magnoliophyta|Rep:
           Arabidopsis thaliana genomic DNA, chromosome 5, P1
           clone:MAH20 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 471

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
 Frame = -1

Query: 408 PYNCTLVSHMIHMTASSRGASDTRSNNISFRPFSDEAVKK--PVQYKILFYLTEKSQKTI 235
           P+N  LV+ +IH+  +S G +D++   I     S   VK+  PV  K+  +  +  ++ +
Sbjct: 306 PFNPDLVADLIHLRKAS-GLNDSQIPEI-LNEISRRIVKEKGPVVMKMQGFTEKGFKRKL 363

Query: 234 IILAVYTKYARVCKYPHFCTKLGK*CLTVENIPVT*YIN 118
            + A++ K   + + P FC+K     +  E   VT Y+N
Sbjct: 364 AVQALFGKIYYLSELPDFCSKDNS-LIVKEIFGVTEYVN 401


>UniRef50_Q53H47 Cluster: Histone-lysine N-methyltransferase SETMAR
           (EC 2.1.1.43) (SET domain and mariner transposase fusion
           gene-containing protein) (Metnase) (Hsmar1) [Includes:
           Histone-lysine N-methyltransferase; Mariner transposase
           Hsmar1]; n=134; Eumetazoa|Rep: Histone-lysine
           N-methyltransferase SETMAR (EC 2.1.1.43) (SET domain and
           mariner transposase fusion gene-containing protein)
           (Metnase) (Hsmar1) [Includes: Histone-lysine
           N-methyltransferase; Mariner transposase Hsmar1] - Homo
           sapiens (Human)
          Length = 671

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +1

Query: 553 YCVELRAMI*KLVEKQPQPMNRSSPLLLRDNVRSHRARETVLALHKL 693
           Y  E+  M  KL   Q   +NR  P+LL DN R H A+ T+  L++L
Sbjct: 546 YAQEIDEMNQKLQRLQLALVNRKGPILLHDNARPHVAQPTLQKLNEL 592


>UniRef50_Q23702 Cluster: Transposase; n=10; Bilateria|Rep:
           Transposase - Ctenolepisma lineata (Four-lined
           silverfish)
          Length = 151

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 553 YCVELRAMI*KLVEKQPQPMNRSSPLLLRDNVRSHRARET 672
           YC +L  +  KL +  P  +NR   L+ +DN + H AR+T
Sbjct: 95  YCQQLERVYDKLKKMYPTLINRKRALMQQDNAKPHTARKT 134


>UniRef50_Q1VLR3 Cluster: Putative uncharacterized protein; n=1;
           Psychroflexus torquis ATCC 700755|Rep: Putative
           uncharacterized protein - Psychroflexus torquis ATCC
           700755
          Length = 397

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +1

Query: 484 KVIVLNCLGSQQGVMLSNNGRSP--YCVELRAMI*KLVEKQPQPMNRSSPLLLRDNV 648
           KV VL+ L    G   + N  SP  Y  EL  ++ KL+E+QP   ++S+   L DN+
Sbjct: 14  KVYVLSDLSELIGTFKNPNPNSPLQYRFELMVLVQKLIEQQPDLASKSALYDLTDNL 70


>UniRef50_Q2AGU1 Cluster: Regulatory protein, LacI:Periplasmic
           binding protein/LacI transcriptional regulator; n=1;
           Halothermothrix orenii H 168|Rep: Regulatory protein,
           LacI:Periplasmic binding protein/LacI transcriptional
           regulator - Halothermothrix orenii H 168
          Length = 345

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -1

Query: 366 ASSRGASDTRSNNIS--FRPFSDEAVKKPVQYKILFYLTEKSQKTIIILAVYTKYARVCK 193
           AS+R  +  ++NNI   F     E +  P+ Y+IL  +  +S K  + L +YT +    K
Sbjct: 55  ASARSLASRKTNNIGIIFWGHDPEFLSNPIYYEILQGIQRESLKHDLNLVLYTTHKEEEK 114

Query: 192 YPHFCTKL 169
               C K+
Sbjct: 115 RQELCYKI 122


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 608,942,560
Number of Sequences: 1657284
Number of extensions: 11349153
Number of successful extensions: 21391
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21385
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)