Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0057
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...    30   0.36 
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   1.9  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   2.6  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    26   4.5  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    26   4.5  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    26   4.5  
SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.9  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    26   5.9  

>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 323 DMLFDRVSEAPLDEAVMWIIW 385
           D LFD +S +PL E V WI W
Sbjct: 24  DELFDDLSSSPLHENVSWISW 44


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 525 NTLLRPQT-VKYYYLFIYFCLLPENYELTRVTP 430
           N LL+ +  + YYY ++  CL P  + + R+ P
Sbjct: 57  NILLKYELFIIYYYYYLLICLSPHFFPIKRIRP 89


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 462 PENYELTRVTPQLLFIMIPYNCTLVSHMIH 373
           PEN+E  + +   +FI  P  C +++H++H
Sbjct: 873 PENFEFKKKSGGKVFISYP--CVMLNHLVH 900


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -1

Query: 327 ISFRPFSDEAVKKPVQYKILFYLTEKSQKTIIILAVYTKYARVCKYPH 184
           I+F P     V     YK+  +   KS+K +  L  +  Y RVC + H
Sbjct: 59  IAFHPTQPLFVSGGDDYKVNVW-NYKSRKLLFSLCGHMDYVRVCTFHH 105


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
 Frame = -1

Query: 384 HMIHMTASSRGASDTRSNNI-SFRPFSDEAVKKPVQYKIL------FYLTEKSQKTIIIL 226
           H +   +S+   S+ R   I +F   +D + +    Y +L         TE +Q+ ++  
Sbjct: 116 HDLQTFSSNLNHSNNRRQTICNFNMANDASKENETPYMVLNNKFNPVLTTEYTQQHLVQC 175

Query: 225 AVYTKYARVCKYPHFCTKLGK*CLTVENIP 136
            +  +     ++PHF TKL    L   N+P
Sbjct: 176 KMVLENHITSRFPHFYTKLPDVSLVPNNMP 205


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 254 RKVKRRL*F*PYTQNMRVCVNTPISVLSWA 165
           RKV R+  + PYT    V  NTP S++S A
Sbjct: 309 RKVSRQ--YWPYTSENSVLANTPQSIISLA 336


>SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 350 PPTLDQITYRLDHSQMKPSKNLYNT 276
           PPT D+I +   H+  KP  N Y++
Sbjct: 93  PPTNDEIKFVNRHTGSKPQPNFYSS 117


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -1

Query: 456 NYELTRVTPQLLFIMIPYNCTL-VSHMIHMTASSRGASDTRSNNISFRPFSDE 301
           N+ L  V P  L  ++P+NCT     ++H   +   +    +  +   PF DE
Sbjct: 259 NHSLPNVRPHTLESVMPHNCTKNAMDLLHKMLTYVPSKRISAIEVLTHPFFDE 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,166
Number of Sequences: 5004
Number of extensions: 51942
Number of successful extensions: 105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)