Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0057
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0773 + 5963165-5963306,5963440-5963489,5963580-5963645,596...    29   3.5  
08_02_0450 - 17266977-17267165,17268017-17268053,17268139-172695...    28   6.1  
01_07_0138 - 41383304-41384458                                         28   6.1  

>07_01_0773 +
           5963165-5963306,5963440-5963489,5963580-5963645,
           5964162-5964188,5965320-5965375,5966613-5966681,
           5966901-5966995,5967141-5967251,5970545-5970879,
           5971218-5971253,5971254-5971421
          Length = 384

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = -1

Query: 348 SDTRSNNISFRPFSDEAVKKPVQYKILFYLTEKSQKTIIILAVYT 214
           ++ + NN S    +DE ++KP  +   +YLT + ++T ++  V++
Sbjct: 298 AEIKLNNYSLEAVADEVLRKPF-FSDKYYLTMQVKRTSVLACVFS 341


>08_02_0450 -
           17266977-17267165,17268017-17268053,17268139-17269514,
           17285369-17286055,17286146-17286343
          Length = 828

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 465 LPENYELTR-VTPQLLFIMIPYNCTLVSHMIHMTASSRGASDTRSNNISFRPFSD 304
           +PE YE  +   P  L   +P+    V H  +M AS +GA  +  N I F  F D
Sbjct: 681 VPETYEYGKPFLPTYLMNKLPWEMR-VMHEWYMKASRKGAFMSGPNGIFFISFQD 734


>01_07_0138 - 41383304-41384458
          Length = 384

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 477 YFCLLPENYELTRVTPQLLFIMIPY 403
           Y+C  P+ Y L   TP   ++++P+
Sbjct: 343 YYCFHPDEYRLPTATPGCTYLIVPH 367


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,639,974
Number of Sequences: 37544
Number of extensions: 289375
Number of successful extensions: 538
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)