Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0057
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39649| Best HMM Match : DUF81 (HMM E-Value=3.3)                     29   4.7  
SB_31539| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_5605| Best HMM Match : Peptidase_C2 (HMM E-Value=2e-13)             28   6.2  

>SB_39649| Best HMM Match : DUF81 (HMM E-Value=3.3)
          Length = 681

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 119 LIYYVTGIFSTVKHYLPSLVQKWG-YLHTRAYF 214
           LI  V GIF  V  Y P +V +WG +    AYF
Sbjct: 465 LIVLVWGIFQEVIAYFPLIVPEWGIFQEVIAYF 497


>SB_31539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 835

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -1

Query: 369 TASSRGASDTRSNNISFRPFSDEAVKKPVQYKILFYLTEKSQK-TIIILAVYTKYARVC 196
           ++SS G + T     ++  FS++   +  Q  +LF  T++  K  +I++ V ++Y   C
Sbjct: 640 SSSSPGYTQTSPRPTTYAHFSEQIPNRIHQSDLLFLPTDRGYKYALIVVDVASRYKAAC 698


>SB_5605| Best HMM Match : Peptidase_C2 (HMM E-Value=2e-13)
          Length = 598

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +2

Query: 296 TASSENGLNDMLFDRVSEAPLDEAVMWIIWET 391
           T   E  LN   +DR S    D  V WI WET
Sbjct: 429 TPELERALN---YDRKSAIQFDNGVFWIAWET 457


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,019,513
Number of Sequences: 59808
Number of extensions: 363439
Number of successful extensions: 578
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)