Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0057
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038608-11|AAC25815.1|  319|Caenorhabditis elegans Serpentine r...    29   3.2  
AF098997-10|AAC68712.2|  325|Caenorhabditis elegans Serpentine r...    28   7.3  

>AF038608-11|AAC25815.1|  319|Caenorhabditis elegans Serpentine
           receptor, class z protein79 protein.
          Length = 319

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 92  ISYSYINIQLIYYVTGIFSTVKHYLPS--LVQKWGYLHTRAYFVYTAKIIIVF 244
           +SY+ + +  ++Y+  + S  K Y      VQK+ Y  T   F++ +  I++F
Sbjct: 195 LSYALLFLSTVFYIPIMISAWKVYPAQKCAVQKYIYWQTLTVFIFKSTAIVIF 247


>AF098997-10|AAC68712.2|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein43 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 498 KYYYL-FIYFCLLPENYELTRVTPQLLFIMIPYNC 397
           KYY L F  FC+L + +    V P  LF  + Y+C
Sbjct: 42  KYYILAFQVFCMLADFHISLLVQPMYLFQFMTYSC 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,454,520
Number of Sequences: 27780
Number of extensions: 288604
Number of successful extensions: 536
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)