Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0057
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          29   0.055
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   1.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.4  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 28.7 bits (61), Expect = 0.055
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
 Frame = +1

Query: 385 GD*GTIIRNHNKK*LWRHSRQFVIFW**TKVNKKVIVLNCLGSQQGV----MLSNN---G 543
           GD   ++ N  +K  W   R+         +++K ++L+     +G+    +LS N    
Sbjct: 31  GDEKWVVNNIKRKRWWSRPREPAQTTSKAGIHRKKVLLSVWWDYKGIVYFELLSPNRTIN 90

Query: 544 RSPYCVELRAMI*KLVEKQPQPMNRSSPLLLRDNVRSHRARET 672
              Y  +L  +   + EK+P+  NR S +   DN R H +  T
Sbjct: 91  SVVYIEQLTKLNNAVEEKRPELTNRKSVVFHHDNARPHTSLVT 133


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 411 IPYNCTLVSHMIHMTASSRGASDTRSNNISF 319
           +PY+ TL+SH       SR  S  RS    F
Sbjct: 331 VPYSGTLISHYEDGETKSRFISGIRSEQTIF 361


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 553 YCVELRAMI*KLVEKQPQPMNRSSPLLLRDNVRSHRARET 672
           Y  +L  +   + EK+P+  NR   +   DN R H +  T
Sbjct: 216 YIEQLTKLNNAVEEKRPELTNRKGVVFHHDNARPHTSLVT 255


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 550 GICRYCLT*HPAETPNS*VL 491
           G C YC++  P E P+  VL
Sbjct: 321 GDCYYCISGAPIERPDHAVL 340


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 234 IILAVYTKYARVCKYPH 184
           I+   +T Y  VC+Y H
Sbjct: 147 ILCVPFTTYTPVCEYDH 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,011
Number of Sequences: 438
Number of extensions: 3643
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)