Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0057
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08540.1 68418.m01016 expressed protein similar to unknown pr...    33   0.18 
At3g04440.1 68416.m00470 expressed protein contains Pfam domain,...    28   6.8  
At3g03700.1 68416.m00373 expressed protein contains Pfam domain,...    28   6.8  

>At5g08540.1 68418.m01016 expressed protein similar to unknown
           protein (pir||T27191)
          Length = 346

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
 Frame = -1

Query: 408 PYNCTLVSHMIHMTASSRGASDTRSNNISFRPFSDEAVKK--PVQYKILFYLTEKSQKTI 235
           P+N  LV+ +IH+  +S G +D++   I     S   VK+  PV  K+  +  +  ++ +
Sbjct: 204 PFNPDLVADLIHLRKAS-GLNDSQIPEI-LNEISRRIVKEKGPVVMKMQGFTEKGFKRKL 261

Query: 234 IILAVYTKYARVCKYPHFCTK 172
            + A++ K   + + P FC+K
Sbjct: 262 AVQALFGKIYYLSELPDFCSK 282


>At3g04440.1 68416.m00470 expressed protein contains Pfam domain,
           PF04515: Protein of unknown function, DUF580
          Length = 482

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 116 QLIYYVTGIFSTVKHYLPSLVQKWGYLHTRAY 211
           +++Y     FST+ + L +L  +WG++H   Y
Sbjct: 311 EVMYSGADCFSTIANKLITLGNRWGFVHVGTY 342


>At3g03700.1 68416.m00373 expressed protein contains Pfam domain,
           PF04515: Protein of unknown function, DUF580
          Length = 482

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 116 QLIYYVTGIFSTVKHYLPSLVQKWGYLHTRAY 211
           +++Y     FST+ + L +L  +WG++H   Y
Sbjct: 311 EVMYSGADCFSTIANKLITLGNRWGFVHVGTY 342


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,190,244
Number of Sequences: 28952
Number of extensions: 252774
Number of successful extensions: 502
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)