Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0056
(678 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P19387 Cluster: DNA-directed RNA polymerase II subunit ... 153 3e-36
UniRef50_Q3UUX3 Cluster: 16 days neonate thymus cDNA, RIKEN full... 151 1e-35
UniRef50_Q54DH7 Cluster: RNA polymerase II core subunit; n=1; Di... 95 1e-18
UniRef50_Q4X0L2 Cluster: RNA polymerase II subunit 3; n=17; Asco... 81 2e-14
UniRef50_P16370 Cluster: DNA-directed RNA polymerase II subunit ... 81 2e-14
UniRef50_Q39211 Cluster: DNA-directed RNA polymerase II subunit ... 79 1e-13
UniRef50_Q8SRR5 Cluster: DNA-DIRECTED RNA POLYMERASE II THIRD CH... 78 2e-13
UniRef50_Q4P8L3 Cluster: Putative uncharacterized protein; n=1; ... 78 2e-13
UniRef50_Q75B05 Cluster: ADL120Cp; n=1; Eremothecium gossypii|Re... 77 3e-13
UniRef50_Q9AW23 Cluster: DNA-directed RNA polymerase II; n=1; Gu... 73 5e-12
UniRef50_A6RAE4 Cluster: Putative uncharacterized protein; n=1; ... 73 9e-12
UniRef50_Q5CNH1 Cluster: Conjugation stage-specific protein; n=2... 71 3e-11
UniRef50_A4R7L3 Cluster: Putative uncharacterized protein; n=1; ... 71 3e-11
UniRef50_A7AWB4 Cluster: DNA-directed RNA polymerase II, putativ... 70 5e-11
UniRef50_Q4UFZ3 Cluster: DNA-directed RNA polymerase ii, putativ... 70 6e-11
UniRef50_Q5KG24 Cluster: RNA polymerase II subunit 3, putative; ... 64 4e-09
UniRef50_Q8I2S6 Cluster: DNA-directed RNA polymerase II, putativ... 62 9e-09
UniRef50_O26144 Cluster: DNA-directed RNA polymerase subunit D; ... 61 3e-08
UniRef50_A2F4R6 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation ... 59 8e-08
UniRef50_Q4DWU1 Cluster: DNA-directed RNA polymerase II subunit ... 55 1e-06
UniRef50_A4RSP9 Cluster: DNA-directed RNA polymerase II subunit ... 53 6e-06
UniRef50_P95989 Cluster: DNA-directed RNA polymerase subunit D; ... 52 1e-05
UniRef50_P16925 Cluster: Conjugation stage-specific protein; n=2... 52 1e-05
UniRef50_Q5CJZ9 Cluster: DNA-directed RNA polymerase I; n=2; Cry... 52 2e-05
UniRef50_A3CWH9 Cluster: RNA polymerase, insert precursor; n=4; ... 50 7e-05
UniRef50_A2BK79 Cluster: DNA-directed RNA polymerase subunit D; ... 49 9e-05
UniRef50_A3DMQ6 Cluster: RNA polymerase, insert; n=1; Staphyloth... 49 1e-04
UniRef50_Q7QR57 Cluster: GLP_301_28021_29001; n=2; Giardia intes... 48 2e-04
UniRef50_A7DRR8 Cluster: RNA polymerase, insert; n=1; Candidatus... 48 3e-04
UniRef50_Q9YB53 Cluster: DNA-directed RNA polymerase subunit D; ... 47 4e-04
UniRef50_Q235X0 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation ... 45 0.001
UniRef50_O28002 Cluster: DNA-directed RNA polymerase subunit D; ... 44 0.003
UniRef50_Q3LWA0 Cluster: DNA-directed RNA polymerase II third la... 44 0.005
UniRef50_Q8ZYQ3 Cluster: DNA-directed RNA polymerase subunit D; ... 43 0.006
UniRef50_Q8TVB8 Cluster: DNA-directed RNA polymerase subunit D; ... 43 0.006
UniRef50_A0D2I2 Cluster: Chromosome undetermined scaffold_35, wh... 43 0.008
UniRef50_A0DID7 Cluster: Chromosome undetermined scaffold_51, wh... 42 0.018
UniRef50_A3H5J7 Cluster: RNA polymerase, insert; n=3; Thermoprot... 42 0.018
UniRef50_P07703 Cluster: DNA-directed RNA polymerases I and III ... 42 0.018
UniRef50_Q4UFV7 Cluster: DNA-directed RNA polymerases I and III,... 41 0.024
UniRef50_UPI0000498947 Cluster: DNA-directed RNA polymerase II s... 41 0.032
UniRef50_Q54SN4 Cluster: RNA polymerase III subunit; n=1; Dictyo... 41 0.032
UniRef50_A0RXU9 Cluster: DNA-directed RNA polymerase, alpha subu... 41 0.032
UniRef50_A0B9L4 Cluster: RNA polymerase, insert; n=1; Methanosae... 41 0.032
UniRef50_Q7PPN8 Cluster: ENSANGP00000012965; n=1; Anopheles gamb... 40 0.042
UniRef50_UPI00015BADF0 Cluster: DNA-directed RNA polymerase, sub... 40 0.056
UniRef50_O15160 Cluster: DNA-directed RNA polymerases I and III ... 39 0.097
UniRef50_A6R4R6 Cluster: DNA-directed RNA polymerases I and III ... 39 0.13
UniRef50_UPI0000D8A090 Cluster: rna polymerase ii b3 subunit; n=... 38 0.17
UniRef50_Q39216 Cluster: RNA polymerase subunit; n=10; Magnoliop... 38 0.22
UniRef50_Q8SSL9 Cluster: DNA-DIRECTED RNA POLYMERASE I; n=1; Enc... 37 0.39
UniRef50_Q0DY01 Cluster: Os02g0723600 protein; n=3; Oryza sativa... 37 0.52
UniRef50_Q7QVM7 Cluster: GLP_305_30255_31307; n=1; Giardia lambl... 37 0.52
UniRef50_Q4DDL2 Cluster: DNA-directed RNA polymerase, alpha subu... 37 0.52
UniRef50_UPI00015B4B82 Cluster: PREDICTED: similar to bifunction... 36 1.2
UniRef50_Q3LWA1 Cluster: DNA-directed RNA polymerase I 40kDa sub... 35 1.6
UniRef50_Q2UFF5 Cluster: RNA polymerase I and III; n=3; Pezizomy... 35 1.6
UniRef50_Q98S79 Cluster: DNA-directed RNA polymerase 40k chain; ... 35 2.1
UniRef50_Q4YX04 Cluster: DNA-directed RNA polymerase I, putative... 35 2.1
UniRef50_Q4PBM5 Cluster: Putative uncharacterized protein; n=1; ... 35 2.1
UniRef50_Q97B93 Cluster: DNA-directed RNA polymerase subunit D; ... 35 2.1
UniRef50_Q57648 Cluster: DNA-directed RNA polymerase subunit D; ... 35 2.1
UniRef50_Q9UAY9 Cluster: Putative uncharacterized protein; n=2; ... 34 2.8
UniRef50_Q4X0E8 Cluster: DNA-directed RNA polymerase I and III s... 34 2.8
UniRef50_A1RWW0 Cluster: RNA polymerase, insert precursor; n=1; ... 34 2.8
UniRef50_Q014V0 Cluster: RNA polymerase subunit; n=2; Ostreococc... 34 3.7
UniRef50_Q5KIG6 Cluster: Putative uncharacterized protein; n=1; ... 34 3.7
UniRef50_Q4A280 Cluster: Putative DNA-directed RNA polymerase su... 33 4.8
UniRef50_A2ER03 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation ... 33 4.8
UniRef50_A5UN55 Cluster: DNA-directed RNA polymerase, subunit D,... 33 4.8
UniRef50_Q89DV5 Cluster: Blr7332 protein; n=2; Proteobacteria|Re... 33 8.4
UniRef50_Q4QDF5 Cluster: DNA-directed RNA polymerase, alpha subu... 33 8.4
UniRef50_A7RR02 Cluster: Predicted protein; n=1; Nematostella ve... 33 8.4
UniRef50_Q8U0E4 Cluster: DNA-directed RNA polymerase subunit D; ... 33 8.4
>UniRef50_P19387 Cluster: DNA-directed RNA polymerase II subunit
RPB3; n=36; Eumetazoa|Rep: DNA-directed RNA polymerase
II subunit RPB3 - Homo sapiens (Human)
Length = 275
Score = 153 bits (372), Expect = 3e-36
Identities = 71/124 (57%), Positives = 90/124 (72%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AIDWVQ++ANS+VL DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV
Sbjct: 46 AIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDV 105
Query: 436 KCTDEQTRHVTNC*FEIERS*SCPFTSRHRDEDQADYGEADEILIH*VTQGSGIEASGIC 615
+C ++QTRHVT+ P TSR+RD D DY E D+ILI + +G +
Sbjct: 106 RCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYA 165
Query: 616 QKRF 627
+K F
Sbjct: 166 KKGF 169
Score = 54.4 bits (125), Expect = 2e-06
Identities = 22/30 (73%), Positives = 29/30 (96%)
Frame = +3
Query: 123 MPYANQPSVHITELSDENVKFVVEDTELSV 212
MPYANQP+V ITEL+DENVKF++E+T+L+V
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAV 30
Score = 52.4 bits (120), Expect = 1e-05
Identities = 28/57 (49%), Positives = 35/57 (61%)
Frame = +2
Query: 476 DLKSSDPRVVPLHHDIEMKTRPIMVKQMKY*FIKLRKGQELKLRAYAKKGFGERACK 646
DL S+ PRV+P+ V+Q +KLRKGQEL+LRAYAKKGFG+ K
Sbjct: 119 DLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
Score = 32.7 bits (71), Expect = 8.4
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +3
Query: 618 KKVLGKEHAKWNPTGWV 668
KK GKEHAKWNPT V
Sbjct: 166 KKGFGKEHAKWNPTAGV 182
>UniRef50_Q3UUX3 Cluster: 16 days neonate thymus cDNA, RIKEN
full-length enriched library, clone:A130010H16
product:polymerase (RNA) II (DNA directed) polypeptide
C, full insert sequence; n=8; Mammalia|Rep: 16 days
neonate thymus cDNA, RIKEN full-length enriched library,
clone:A130010H16 product:polymerase (RNA) II (DNA
directed) polypeptide C, full insert sequence - Mus
musculus (Mouse)
Length = 332
Score = 151 bits (367), Expect = 1e-35
Identities = 70/124 (56%), Positives = 89/124 (71%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AIDWVQ++ANS+VL DEF+AHR+GLIPL SDD+VDK++YSRDC C +FC ECSVEFTLDV
Sbjct: 46 AIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDV 105
Query: 436 KCTDEQTRHVTNC*FEIERS*SCPFTSRHRDEDQADYGEADEILIH*VTQGSGIEASGIC 615
+C ++QTRHVT+ P TSR+RD D DY E D+ILI + +G +
Sbjct: 106 RCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYA 165
Query: 616 QKRF 627
+K F
Sbjct: 166 KKGF 169
Score = 52.8 bits (121), Expect = 7e-06
Identities = 21/30 (70%), Positives = 29/30 (96%)
Frame = +3
Query: 123 MPYANQPSVHITELSDENVKFVVEDTELSV 212
MPYANQP+V ITEL++ENVKF++E+T+L+V
Sbjct: 1 MPYANQPTVRITELTEENVKFIIENTDLAV 30
Score = 52.4 bits (120), Expect = 1e-05
Identities = 28/57 (49%), Positives = 35/57 (61%)
Frame = +2
Query: 476 DLKSSDPRVVPLHHDIEMKTRPIMVKQMKY*FIKLRKGQELKLRAYAKKGFGERACK 646
DL S+ PRV+P+ V+Q +KLRKGQEL+LRAYAKKGFG+ K
Sbjct: 119 DLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
Score = 33.1 bits (72), Expect = 6.4
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +3
Query: 618 KKVLGKEHAKWNPTGWV 668
KK GKEHAKWNPT V
Sbjct: 166 KKGFGKEHAKWNPTAXV 182
>UniRef50_Q54DH7 Cluster: RNA polymerase II core subunit; n=1;
Dictyostelium discoideum AX4|Rep: RNA polymerase II core
subunit - Dictyostelium discoideum AX4
Length = 302
Score = 95.1 bits (226), Expect = 1e-18
Identities = 44/87 (50%), Positives = 62/87 (71%)
Frame = +1
Query: 259 IDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVK 438
ID V+ E+N++VL DEF+AHR+GLIPL+SD++ DK Y+RDC C D C +CSVE L+VK
Sbjct: 52 IDLVEFESNNSVLCDEFIAHRLGLIPLVSDNI-DKFCYTRDCSCSDRCDQCSVELRLNVK 110
Query: 439 CTDEQTRHVTNC*FEIERS*SCPFTSR 519
CT+ + R VT+ + S P +S+
Sbjct: 111 CTENRPRDVTSSDLLSQNSAVIPVSSQ 137
Score = 39.9 bits (89), Expect = 0.056
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +2
Query: 470 TADLKSSDPRVVPLHHDIEMKTRPIMVKQMKY*FIKLRKGQELKLRAYAKKGFGERACK 646
++DL S + V+P+ + + + +KLR+GQE+KLRA AKKG G+ K
Sbjct: 121 SSDLLSQNSAVIPVSSQVTSSN-----SEQEIPIVKLRRGQEIKLRAIAKKGVGKEHAK 174
>UniRef50_Q4X0L2 Cluster: RNA polymerase II subunit 3; n=17;
Ascomycota|Rep: RNA polymerase II subunit 3 -
Aspergillus fumigatus (Sartorya fumigata)
Length = 392
Score = 81.4 bits (192), Expect = 2e-14
Identities = 35/66 (53%), Positives = 47/66 (71%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AID V++E N++VL DEFLAHR+GLIPL S + + Y+RDC C D C+ CSV TL
Sbjct: 107 AIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNCDQDVEYTRDCDCEDHCARCSVTLTLHA 166
Query: 436 KCTDEQ 453
+CT ++
Sbjct: 167 RCTGDE 172
>UniRef50_P16370 Cluster: DNA-directed RNA polymerase II subunit
RPB3; n=8; Ascomycota|Rep: DNA-directed RNA polymerase
II subunit RPB3 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 318
Score = 81.4 bits (192), Expect = 2e-14
Identities = 38/70 (54%), Positives = 50/70 (71%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AID V++E N+TVL+DEF+AHR+GLIPL S D ++++ YSRDC C D C +CSV TL
Sbjct: 45 AIDSVEVETNTTVLADEFIAHRLGLIPLQSMD-IEQLEYSRDCFCEDHCDKCSVVLTLQA 103
Query: 436 KCTDEQTRHV 465
E T +V
Sbjct: 104 FGESESTTNV 113
>UniRef50_Q39211 Cluster: DNA-directed RNA polymerase II subunit
RPB3-A; n=14; Magnoliophyta|Rep: DNA-directed RNA
polymerase II subunit RPB3-A - Arabidopsis thaliana
(Mouse-ear cress)
Length = 319
Score = 78.6 bits (185), Expect = 1e-13
Identities = 40/75 (53%), Positives = 52/75 (69%), Gaps = 3/75 (4%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVD---FCSECSVEFT 426
AID V++E NS+VL+DEF+AHR+GLIPL S+ + +R+SRDC D C CSVEF
Sbjct: 49 AIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFR 107
Query: 427 LDVKCTDEQTRHVTN 471
L KC +QT VT+
Sbjct: 108 LSSKCVTDQTLDVTS 122
Score = 43.2 bits (97), Expect = 0.006
Identities = 24/57 (42%), Positives = 32/57 (56%)
Frame = +2
Query: 476 DLKSSDPRVVPLHHDIEMKTRPIMVKQMKY*FIKLRKGQELKLRAYAKKGFGERACK 646
DL S+DP V P+ I+ + +KLR+GQELKLRA A+KG G+ K
Sbjct: 124 DLYSADPTVTPVDFTIDSSVSDSS-EHKGIIIVKLRRGQELKLRAIARKGIGKDHAK 179
>UniRef50_Q8SRR5 Cluster: DNA-DIRECTED RNA POLYMERASE II THIRD
CHAIN; n=1; Encephalitozoon cuniculi|Rep: DNA-DIRECTED
RNA POLYMERASE II THIRD CHAIN - Encephalitozoon cuniculi
Length = 240
Score = 77.8 bits (183), Expect = 2e-13
Identities = 37/71 (52%), Positives = 49/71 (69%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AID V++E N+TVL DE LAHR+GLIP+ S +++Y +C C FCSECSV F +DV
Sbjct: 41 AIDMVEIERNNTVLPDEVLAHRLGLIPIYSK---RELKYKEECSCSGFCSECSVVFEIDV 97
Query: 436 KCTDEQTRHVT 468
TD+ R V+
Sbjct: 98 VHTDDTLRTVS 108
>UniRef50_Q4P8L3 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 329
Score = 77.8 bits (183), Expect = 2e-13
Identities = 35/72 (48%), Positives = 45/72 (62%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AID V++ N+TVL DE LAHR+G++PL+S D + RDC C D C CSVE TL
Sbjct: 51 AIDMVEIRNNTTVLPDEMLAHRLGMVPLLSMDCAKALVDHRDCACEDGCDRCSVELTLRA 110
Query: 436 KCTDEQTRHVTN 471
+CT VT+
Sbjct: 111 RCTTRGNLEVTS 122
>UniRef50_Q75B05 Cluster: ADL120Cp; n=1; Eremothecium gossypii|Rep:
ADL120Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 311
Score = 77.4 bits (182), Expect = 3e-13
Identities = 35/70 (50%), Positives = 49/70 (70%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AID V++E+N++VL+DEF++HR+GL+PL S D +D++ Y RDC C D C CSV TL
Sbjct: 45 AIDSVEIESNTSVLADEFISHRLGLVPLQSKD-IDQLVYCRDCFCEDHCDRCSVLLTLHA 103
Query: 436 KCTDEQTRHV 465
E T +V
Sbjct: 104 VGESESTTNV 113
>UniRef50_Q9AW23 Cluster: DNA-directed RNA polymerase II; n=1;
Guillardia theta|Rep: DNA-directed RNA polymerase II -
Guillardia theta (Cryptomonas phi)
Length = 299
Score = 73.3 bits (172), Expect = 5e-12
Identities = 32/66 (48%), Positives = 47/66 (71%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AID V +E N++ DEF+AHR+GLIP+ S++ D I+YSR+C C + C +CS+ FTLDV
Sbjct: 38 AIDKVYIEKNTSSFKDEFIAHRLGLIPIFSEN-ADLIKYSRECDCENECEKCSILFTLDV 96
Query: 436 KCTDEQ 453
+ +
Sbjct: 97 HANETE 102
>UniRef50_A6RAE4 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 576
Score = 72.5 bits (170), Expect = 9e-12
Identities = 33/70 (47%), Positives = 45/70 (64%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AID V++E+N++VL DEF++HR+GLIPL S + + YSRDC C C+ C V L
Sbjct: 75 AIDVVEIESNTSVLPDEFISHRLGLIPLNSKNCDADMEYSRDCDCEGGCARCVVTLQLQA 134
Query: 436 KCTDEQTRHV 465
+CT E V
Sbjct: 135 RCTGEDIMKV 144
>UniRef50_Q5CNH1 Cluster: Conjugation stage-specific protein; n=2;
Cryptosporidium|Rep: Conjugation stage-specific protein
- Cryptosporidium hominis
Length = 355
Score = 70.9 bits (166), Expect = 3e-11
Identities = 34/72 (47%), Positives = 48/72 (66%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AID V + N++VL DEF+ HR+GLIPL S ++ D + C C + C++CSVE+ LDV
Sbjct: 49 AIDLVTMIDNTSVLHDEFIVHRMGLIPLDSTNIRD-FNFKDRCECQERCNKCSVEYLLDV 107
Query: 436 KCTDEQTRHVTN 471
C TR+VT+
Sbjct: 108 TCEGGATRNVTH 119
>UniRef50_A4R7L3 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 330
Score = 70.5 bits (165), Expect = 3e-11
Identities = 31/70 (44%), Positives = 46/70 (65%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AID +++ N++VL+DEF+AHR+GL+PL S ++ Y+RDC C +C CSV T+
Sbjct: 54 AIDNCEIKENTSVLADEFIAHRLGLVPL-SARGASELVYARDCDCEQYCENCSVIITIHA 112
Query: 436 KCTDEQTRHV 465
KC E +V
Sbjct: 113 KCESEDPNYV 122
>UniRef50_A7AWB4 Cluster: DNA-directed RNA polymerase II, putative;
n=1; Babesia bovis|Rep: DNA-directed RNA polymerase II,
putative - Babesia bovis
Length = 382
Score = 70.1 bits (164), Expect = 5e-11
Identities = 34/72 (47%), Positives = 49/72 (68%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AI+ V + N++VL DE++AHR+GL+P+ S + Y C C D CS C+VE++LDV
Sbjct: 49 AIEVVTVLENTSVLHDEYIAHRLGLLPIESSSARN-FEYRDKCTCSDKCSRCTVEYSLDV 107
Query: 436 KCTDEQTRHVTN 471
KC D+ TR VT+
Sbjct: 108 KCMDD-TRVVTH 118
>UniRef50_Q4UFZ3 Cluster: DNA-directed RNA polymerase ii, putative;
n=2; Theileria|Rep: DNA-directed RNA polymerase ii,
putative - Theileria annulata
Length = 354
Score = 69.7 bits (163), Expect = 6e-11
Identities = 29/72 (40%), Positives = 48/72 (66%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AI+ V + N++VL DE+++HR+GL+P I + + + C C D C++C+V++TLDV
Sbjct: 49 AIEIVTVLENTSVLHDEYISHRLGLLP-IDSTLASEFEFRDRCQCTDKCAKCTVDYTLDV 107
Query: 436 KCTDEQTRHVTN 471
C D +R VT+
Sbjct: 108 SCNDSNSRLVTH 119
>UniRef50_Q5KG24 Cluster: RNA polymerase II subunit 3, putative;
n=2; Filobasidiella neoformans|Rep: RNA polymerase II
subunit 3, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 377
Score = 63.7 bits (148), Expect = 4e-09
Identities = 31/60 (51%), Positives = 39/60 (65%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AID V N+T L+DE +AHR+GLIPLIS +V +RY+RDC C + C C V L V
Sbjct: 64 AIDQVLFMQNTTPLADEMIAHRLGLIPLISRNVSKGLRYTRDCDCDEGCYYCMVTLRLKV 123
>UniRef50_Q8I2S6 Cluster: DNA-directed RNA polymerase II, putative;
n=5; Plasmodium|Rep: DNA-directed RNA polymerase II,
putative - Plasmodium falciparum (isolate 3D7)
Length = 335
Score = 62.5 bits (145), Expect = 9e-09
Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AID V + N++ DEF+AHR+GLIP+ S + V+ + C C + CS+C++++ ++V
Sbjct: 50 AIDVVNVYENTSAFHDEFIAHRLGLIPIDSRN-VNNYEFREKCKCKETCSKCTIQYIIEV 108
Query: 436 KCTDEQTRHVTNC*FE-IERS*SCPFTSRHRDED 534
KC V++ E +E + P H +++
Sbjct: 109 KCNHSNKIDVSHYDIESLEHEPNVPMPIPHGNKN 142
>UniRef50_O26144 Cluster: DNA-directed RNA polymerase subunit D;
n=2; Methanobacteriaceae|Rep: DNA-directed RNA
polymerase subunit D - Methanobacterium
thermoautotrophicum
Length = 264
Score = 60.9 bits (141), Expect = 3e-08
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISD-DVVDKIRYSRDCMCVDFCSECSVEFTLD 432
AI++V + N + DE LAHR+GL+PL +D + + ++ +C C ++CSECSV TL
Sbjct: 40 AIEYVNMYRNDAKMFDEVLAHRLGLVPLAADPEFAESLKMPEECDCEEYCSECSVSLTLR 99
Query: 433 VK 438
K
Sbjct: 100 KK 101
>UniRef50_A2F4R6 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation
domain containing protein; n=1; Trichomonas vaginalis
G3|Rep: RNA polymerase Rpb3/Rpb11 dimerisation domain
containing protein - Trichomonas vaginalis G3
Length = 322
Score = 59.3 bits (137), Expect = 8e-08
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMC----VDFCSECSVEF 423
A+D V+ N++ L DE++AHR+ LIP +S+D DK Y C C + +C C+V +
Sbjct: 52 AVDTVEFFQNTSPLPDEYIAHRLALIPFVSED-ADKFFYHSQCNCDGSQLGYCPNCTVIY 110
Query: 424 TLDVKCTDE 450
T+D C E
Sbjct: 111 TIDAHCEPE 119
>UniRef50_Q4DWU1 Cluster: DNA-directed RNA polymerase II subunit 3,
putative; n=5; Trypanosomatidae|Rep: DNA-directed RNA
polymerase II subunit 3, putative - Trypanosoma cruzi
Length = 363
Score = 55.2 bits (127), Expect = 1e-06
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Frame = +1
Query: 259 IDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMC-VDFCSECSVEFTLDV 435
I+ V + N++VL DE +AHRIGL+PL S +++Y+RDC+C C EC + L V
Sbjct: 73 IESVTIIQNTSVLPDEMIAHRIGLVPLYSMK-ARRMQYARDCLCGGSGCGECQINGELKV 131
Query: 436 KC 441
C
Sbjct: 132 SC 133
>UniRef50_A4RSP9 Cluster: DNA-directed RNA polymerase II subunit 3;
n=2; Ostreococcus|Rep: DNA-directed RNA polymerase II
subunit 3 - Ostreococcus lucimarinus CCE9901
Length = 318
Score = 53.2 bits (122), Expect = 6e-06
Identities = 30/72 (41%), Positives = 45/72 (62%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
+ID V++ NS+VL DEFLAHR+GLIPL S + ++ D ++ +E L+V
Sbjct: 48 SIDLVEVIENSSVLCDEFLAHRLGLIPLDSTKASELVKPYEYTGDDDTATDVHLE--LNV 105
Query: 436 KCTDEQTRHVTN 471
+C +QTR VT+
Sbjct: 106 RCQSDQTRDVTS 117
>UniRef50_P95989 Cluster: DNA-directed RNA polymerase subunit D;
n=4; Sulfolobaceae|Rep: DNA-directed RNA polymerase
subunit D - Sulfolobus solfataricus
Length = 265
Score = 52.4 bits (120), Expect = 1e-05
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCM-CVDFCSECSVEFTLD 432
A+D V N++ L DE LAHR+ LIP +S++ +D R+ +C+ C + C +C + ++
Sbjct: 40 AVDDVYFIENNSPLYDEILAHRLALIPFMSEEALDTYRWPEECIECTENCEKCYTKIYIE 99
Query: 433 VKCTDE 450
+ +E
Sbjct: 100 AEAPNE 105
>UniRef50_P16925 Cluster: Conjugation stage-specific protein; n=2;
Tetrahymena thermophila|Rep: Conjugation stage-specific
protein - Tetrahymena thermophila
Length = 310
Score = 52.4 bits (120), Expect = 1e-05
Identities = 28/72 (38%), Positives = 40/72 (55%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AI V++ N++ L DE++AHR+GLIPL S VD Y +C C C C++ F L V
Sbjct: 43 AIHNVKVYENTSSLPDEYIAHRLGLIPLNSAK-VDDYNYIWNCNCQGECDRCTIHFDLRV 101
Query: 436 KCTDEQTRHVTN 471
+ VT+
Sbjct: 102 SNFTNEVLEVTS 113
>UniRef50_Q5CJZ9 Cluster: DNA-directed RNA polymerase I; n=2;
Cryptosporidium|Rep: DNA-directed RNA polymerase I -
Cryptosporidium hominis
Length = 344
Score = 51.6 bits (118), Expect = 2e-05
Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AI+ VQ+ N+ V+ DE LAHR+GLIP++ D + R + D + SV F L+V
Sbjct: 94 AIETVQIYQNNGVIQDEVLAHRLGLIPMLIDPNTIEFRNEDE----DLNEKNSVCFKLNV 149
Query: 436 KCTDEQTRH---VTNC*FEIERS*SCPFTSRHRDE--DQADYGEADEILIH*VTQGSGIE 600
KCT + H +T+ + P + R + D+ILI + G IE
Sbjct: 150 KCTKDDINHEKGITSKAIYSKDLVWIPLSDNQRKKFGKSPPKVVTDDILITKLRPGQSIE 209
Query: 601 ASGICQK 621
A C+K
Sbjct: 210 AILYCEK 216
>UniRef50_A3CWH9 Cluster: RNA polymerase, insert precursor; n=4;
Methanomicrobiales|Rep: RNA polymerase, insert precursor
- Methanoculleus marisnigri (strain ATCC 35101 / DSM
1498 / JR1)
Length = 276
Score = 49.6 bits (113), Expect = 7e-05
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDF-CSECSVEFTLD 432
AI+ V++ N++VL DE LAHR+GLIPL +D + + + +C C D C C+ +TL
Sbjct: 40 AIEDVRIYDNTSVLFDEMLAHRLGLIPLRTD--LKRYKPRSECTCEDAGCPVCTATYTLS 97
Query: 433 VK 438
V+
Sbjct: 98 VE 99
>UniRef50_A2BK79 Cluster: DNA-directed RNA polymerase subunit D;
n=1; Hyperthermus butylicus DSM 5456|Rep: DNA-directed
RNA polymerase subunit D - Hyperthermus butylicus
(strain DSM 5456 / JCM 9403)
Length = 281
Score = 49.2 bits (112), Expect = 9e-05
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCS-ECSVEFTLD 432
A+D V++ N+TVL DE +AHR+GLIPL S + + K + +C + C V L+
Sbjct: 41 AVDVVEVFENNTVLYDEIIAHRLGLIPLTSKEALQKYKRPEECEKAELGDPSCYVVLRLE 100
Query: 433 VKCTDEQTRHV 465
V+ + R V
Sbjct: 101 VETGPREERIV 111
>UniRef50_A3DMQ6 Cluster: RNA polymerase, insert; n=1;
Staphylothermus marinus F1|Rep: RNA polymerase, insert -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 280
Score = 48.8 bits (111), Expect = 1e-04
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVD----FCSECSVEF 423
AID V NS+V DE++AHR+GLIPL S+ +DK + +C F +C V+
Sbjct: 40 AIDSVVFTMNSSVFYDEYIAHRLGLIPLTSEAALDKYKSPEECREAGDRGLFTEDCFVKL 99
Query: 424 TLDVK 438
L+ K
Sbjct: 100 DLEGK 104
Score = 32.7 bits (71), Expect = 8.4
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = +2
Query: 470 TADLKSSDPRVVPLHHDIEMKTRPIMVKQMKY*FIKLRKGQELKLRAYAKKGFGERACK 646
+ DLK+SDP V P++ +I PI+V L K QE++L AYA+ G G+ K
Sbjct: 115 SGDLKTSDPDVKPVYDNI-----PIIV---------LGKNQEIRLEAYARLGRGKEHAK 159
>UniRef50_Q7QR57 Cluster: GLP_301_28021_29001; n=2; Giardia
intestinalis|Rep: GLP_301_28021_29001 - Giardia lamblia
ATCC 50803
Length = 326
Score = 48.0 bits (109), Expect = 2e-04
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDC----MCVDFCSECSVEF 423
AID V+ NST L++EF+AHR+GLIPL + + I Y C C EC+ +
Sbjct: 42 AIDIVKFLDNSTTLTEEFIAHRLGLIPLRTAGSLSAISYWYTCDEEHSTEIECRECTFKG 101
Query: 424 TLDVKCTDEQTRHVTN 471
TL++ + R VT+
Sbjct: 102 TLNISNDSTKIRVVTD 117
>UniRef50_A7DRR8 Cluster: RNA polymerase, insert; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: RNA polymerase,
insert - Candidatus Nitrosopumilus maritimus SCM1
Length = 221
Score = 47.6 bits (108), Expect = 3e-04
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVD--FCSECSVEFTL 429
A+D V + NS+VL DE LAHR+GLIPL +D + + C C CS C V L
Sbjct: 50 AVDTVDIIENSSVLPDEGLAHRLGLIPLKTD--LSRFNEPSKCECQSETGCSNCKVMLVL 107
Query: 430 D 432
D
Sbjct: 108 D 108
>UniRef50_Q9YB53 Cluster: DNA-directed RNA polymerase subunit D;
n=1; Aeropyrum pernix|Rep: DNA-directed RNA polymerase
subunit D - Aeropyrum pernix
Length = 286
Score = 47.2 bits (107), Expect = 4e-04
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSE-CSVEFTL- 429
A+D+ + N+T + DE +AHR+GL+ L S++ V+K R +C + E C VE +L
Sbjct: 46 AVDYAYIFDNTTAVYDEMVAHRLGLVVLDSNEAVEKYRRPEECAGKEPSEEDCFVEVSLE 105
Query: 430 -DVKCTDEQTRHVT 468
+V E R++T
Sbjct: 106 AEVDAEGETGRYIT 119
>UniRef50_Q235X0 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation
domain containing protein; n=1; Tetrahymena thermophila
SB210|Rep: RNA polymerase Rpb3/Rpb11 dimerisation domain
containing protein - Tetrahymena thermophila SB210
Length = 336
Score = 45.2 bits (102), Expect = 0.001
Identities = 22/66 (33%), Positives = 42/66 (63%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AI V + N++++ DE LAHR+GLIP+ +D + + + D ++ + S++FTL +
Sbjct: 85 AIHKVYIYQNTSIIPDEVLAHRLGLIPIYADPRLFEEKQEED----EYNEKNSLKFTLKI 140
Query: 436 KCTDEQ 453
KC+ ++
Sbjct: 141 KCSKKE 146
>UniRef50_O28002 Cluster: DNA-directed RNA polymerase subunit D;
n=1; Archaeoglobus fulgidus|Rep: DNA-directed RNA
polymerase subunit D - Archaeoglobus fulgidus
Length = 264
Score = 44.4 bits (100), Expect = 0.003
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMC-VDFCSECSVEFTLD 432
A+D+V + NS+ DE +AHR+ ++P+ +D+ +C C + C C + F L+
Sbjct: 42 AVDYVDIYLNSSYFYDEVIAHRLAMLPI--KTYLDRFNMQSECSCGGEGCPNCQISFRLN 99
Query: 433 VK 438
V+
Sbjct: 100 VE 101
>UniRef50_Q3LWA0 Cluster: DNA-directed RNA polymerase II third
largest subunit; n=1; Bigelowiella natans|Rep:
DNA-directed RNA polymerase II third largest subunit -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 291
Score = 43.6 bits (98), Expect = 0.005
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCV----DFC---SECS 414
A D + + N++ +DEF+AHRIGLIPLIS+ + + + ++ V FC S C
Sbjct: 44 AADTIMIFENTSNFNDEFIAHRIGLIPLISNTLYEACNWEKNPKIVFDINKFCKNNSSCF 103
Query: 415 VEFTLDVKCTDEQTR 459
V T D +C + R
Sbjct: 104 VS-TKDYRCNTFRNR 117
>UniRef50_Q8ZYQ3 Cluster: DNA-directed RNA polymerase subunit D;
n=2; Pyrobaculum|Rep: DNA-directed RNA polymerase
subunit D - Pyrobaculum aerophilum
Length = 260
Score = 43.2 bits (97), Expect = 0.006
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMC-VDFCSECSVEFTLD 432
AID V + N++V+ DE LAHR+GLIPL + + + DC+ + SECS TL
Sbjct: 41 AIDNVVVVNNTSVMYDEMLAHRLGLIPLTTP--LQSLPPYEDCVSGLADPSECSTRLTLQ 98
Query: 433 VKCTDEQT 456
V + T
Sbjct: 99 VTAEGDTT 106
>UniRef50_Q8TVB8 Cluster: DNA-directed RNA polymerase subunit D;
n=1; Methanopyrus kandleri|Rep: DNA-directed RNA
polymerase subunit D - Methanopyrus kandleri
Length = 275
Score = 43.2 bits (97), Expect = 0.006
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +1
Query: 259 IDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMC-VDFCSECSVEFTLDV 435
I+ V + N T + DE LAHR+GLIPL DD +D+ C C C +C V L+V
Sbjct: 47 IEEVIIYENDTPMYDEMLAHRLGLIPLRVDD-IDQFELPDLCDCGGKGCEKCQVRAELEV 105
Query: 436 K 438
+
Sbjct: 106 E 106
>UniRef50_A0D2I2 Cluster: Chromosome undetermined scaffold_35, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_35,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 316
Score = 42.7 bits (96), Expect = 0.008
Identities = 24/62 (38%), Positives = 39/62 (62%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AI VQ+ N++V+ DE LAHR+GLIP+I+D + + ++ ++ S++FTL
Sbjct: 70 AIHKVQVIQNTSVIPDEVLAHRLGLIPIIADPLQFVEKDDQE----EYNELNSIDFTLYA 125
Query: 436 KC 441
KC
Sbjct: 126 KC 127
>UniRef50_A0DID7 Cluster: Chromosome undetermined scaffold_51, whole
genome shotgun sequence; n=3; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_51,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 308
Score = 41.5 bits (93), Expect = 0.018
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKI-RYSRDCMCVDFCSECSVEFTLD 432
AI +V + N++ LSDEFLA R+GLIPL+S K+ + D +D + V FTL
Sbjct: 50 AIHFVDIIENTSPLSDEFLAQRLGLIPLVSYAADSKMYDWEADADSID-DQKTKVVFTLR 108
Query: 433 VKCTDEQTRHVTN 471
K ++ +T+
Sbjct: 109 QKNLNDAPLEITS 121
>UniRef50_A3H5J7 Cluster: RNA polymerase, insert; n=3;
Thermoproteaceae|Rep: RNA polymerase, insert -
Caldivirga maquilingensis IC-167
Length = 305
Score = 41.5 bits (93), Expect = 0.018
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISD-DVVDKIRYSRDCMCVDFCSECSVEFTLD 432
AID V + N+TV+ DE LAHR+ +IPL ++ + + KI D + VD S C V + L
Sbjct: 44 AIDRVIVLDNTTVMYDEVLAHRLSMIPLKTNLEKLPKIEECEDEL-VD-PSLCQVRYQLS 101
Query: 433 VKCTDE 450
+K D+
Sbjct: 102 IKANDQ 107
>UniRef50_P07703 Cluster: DNA-directed RNA polymerases I and III
subunit RPAC1; n=16; Fungi/Metazoa group|Rep:
DNA-directed RNA polymerases I and III subunit RPAC1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 335
Score = 41.5 bits (93), Expect = 0.018
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVD--FCSECSVEFTL 429
A ++V N++V+ DE LAHRIGL+PL D D + + + D F E ++ +L
Sbjct: 79 AAEYVYFFNNTSVIQDEVLAHRIGLVPLKVDP--DMLTWVDSNLPDDEKFTDENTIVLSL 136
Query: 430 DVKCT 444
+VKCT
Sbjct: 137 NVKCT 141
>UniRef50_Q4UFV7 Cluster: DNA-directed RNA polymerases I and III, 40
kDa polypeptide, putative; n=3; Piroplasmida|Rep:
DNA-directed RNA polymerases I and III, 40 kDa
polypeptide, putative - Theileria annulata
Length = 329
Score = 41.1 bits (92), Expect = 0.024
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPL-ISDDVVDKIRYSRDCMCVDFCSEC----SVE 420
A++ VQ+ N+ V+ DE LAHR+GLIP I D+ + S++ C C E SV
Sbjct: 72 AVETVQIYQNTGVVQDELLAHRLGLIPFSIDPDLFNFKSSSKNNHCFADCEEINDKNSVC 131
Query: 421 FTLDVK 438
F L VK
Sbjct: 132 FKLKVK 137
>UniRef50_UPI0000498947 Cluster: DNA-directed RNA polymerase II
subunit; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
DNA-directed RNA polymerase II subunit - Entamoeba
histolytica HM-1:IMSS
Length = 283
Score = 40.7 bits (91), Expect = 0.032
Identities = 18/33 (54%), Positives = 25/33 (75%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDV 354
AI V++ ANS+ L DEF+AHR+GLIP+ S +
Sbjct: 49 AIQLVRVYANSSYLCDEFIAHRLGLIPIDSTQI 81
>UniRef50_Q54SN4 Cluster: RNA polymerase III subunit; n=1;
Dictyostelium discoideum AX4|Rep: RNA polymerase III
subunit - Dictyostelium discoideum AX4
Length = 345
Score = 40.7 bits (91), Expect = 0.032
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AI+ V + N+++L DE LAHR+G+IP+ VD +++ ++ +E ++ F L V
Sbjct: 98 AIEKVYIINNTSILQDEVLAHRLGMIPI----KVDPRKFNFKLPNKEYTAEDTLIFQLKV 153
Query: 436 KC-TDEQTRHVTN 471
KC D T + N
Sbjct: 154 KCEKDSVTGKIIN 166
>UniRef50_A0RXU9 Cluster: DNA-directed RNA polymerase, alpha
subunit/40 kD subunit; n=1; Cenarchaeum symbiosum|Rep:
DNA-directed RNA polymerase, alpha subunit/40 kD subunit
- Cenarchaeum symbiosum
Length = 212
Score = 40.7 bits (91), Expect = 0.032
Identities = 18/31 (58%), Positives = 25/31 (80%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISD 348
A+D V + N++VL+DE LAHR+GLIPL +D
Sbjct: 41 AVDTVDIVENTSVLADEGLAHRLGLIPLRTD 71
>UniRef50_A0B9L4 Cluster: RNA polymerase, insert; n=1; Methanosaeta
thermophila PT|Rep: RNA polymerase, insert -
Methanosaeta thermophila (strain DSM 6194 / PT)
(Methanothrixthermophila (strain DSM 6194 / PT))
Length = 264
Score = 40.7 bits (91), Expect = 0.032
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDF-CSECSVEFTL 429
AID + + N++VL DE +A R+GL+P+ +DD + +C C C C ++F L
Sbjct: 40 AIDEISIYENTSVLFDEQIALRLGLVPIRADD-LSVYSTPDECQCGGIGCPGCRIDFML 97
>UniRef50_Q7PPN8 Cluster: ENSANGP00000012965; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000012965 - Anopheles gambiae
str. PEST
Length = 252
Score = 40.3 bits (90), Expect = 0.042
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSEC-SVEFTLD 432
AI+ V + N++++ DE LAHR+GLIPL +D + + + + D S ++EF L
Sbjct: 45 AIEKVHIYNNTSIIQDEVLAHRLGLIPLRADPRMFEYKANE----TDPPSALDTLEFELK 100
Query: 433 VKCT 444
VKCT
Sbjct: 101 VKCT 104
>UniRef50_UPI00015BADF0 Cluster: DNA-directed RNA polymerase,
subunit D; n=1; Ignicoccus hospitalis KIN4/I|Rep:
DNA-directed RNA polymerase, subunit D - Ignicoccus
hospitalis KIN4/I
Length = 283
Score = 39.9 bits (89), Expect = 0.056
Identities = 21/62 (33%), Positives = 37/62 (59%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
A+D++ ++ N + L +E LAHR+ +IPL S++ ++ RY+ + C EC+ E
Sbjct: 40 AVDFIAVDRNDSTLFNEVLAHRLAMIPLRSEEALE--RYAPP----EACMECTPEEAEAD 93
Query: 436 KC 441
KC
Sbjct: 94 KC 95
>UniRef50_O15160 Cluster: DNA-directed RNA polymerases I and III
subunit RPAC1; n=45; Eumetazoa|Rep: DNA-directed RNA
polymerases I and III subunit RPAC1 - Homo sapiens
(Human)
Length = 346
Score = 39.1 bits (87), Expect = 0.097
Identities = 21/63 (33%), Positives = 38/63 (60%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
A++ V + N++++ DE LAHR+GLIP+ +D + + R D + +++F L V
Sbjct: 88 AVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQV 144
Query: 436 KCT 444
+CT
Sbjct: 145 RCT 147
>UniRef50_A6R4R6 Cluster: DNA-directed RNA polymerases I and III 40
kDa polypeptide; n=9; Fungi/Metazoa group|Rep:
DNA-directed RNA polymerases I and III 40 kDa
polypeptide - Ajellomyces capsulatus NAm1
Length = 380
Score = 38.7 bits (86), Expect = 0.13
Identities = 18/42 (42%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLI-SDDVVDKIRYSR 378
AI+ V + N++V+ DE LAHR+GL+PL S + ++ +R+ R
Sbjct: 91 AIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSEGINWLRWFR 132
>UniRef50_UPI0000D8A090 Cluster: rna polymerase ii b3 subunit; n=1;
Eimeria tenella|Rep: rna polymerase ii b3 subunit -
Eimeria tenella
Length = 147
Score = 38.3 bits (85), Expect = 0.17
Identities = 16/33 (48%), Positives = 25/33 (75%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDV 354
AID V + N++VL DE++ HR+GL+P+ S +V
Sbjct: 81 AIDLVTVFENTSVLHDEYIVHRLGLLPIDSSNV 113
>UniRef50_Q39216 Cluster: RNA polymerase subunit; n=10;
Magnoliophyta|Rep: RNA polymerase subunit - Arabidopsis
thaliana (Mouse-ear cress)
Length = 385
Score = 37.9 bits (84), Expect = 0.22
Identities = 16/31 (51%), Positives = 24/31 (77%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISD 348
AI+ V + N++V+ DE LAHR+GLIP+ +D
Sbjct: 120 AIEKVYVANNTSVIQDEVLAHRLGLIPIAAD 150
>UniRef50_Q8SSL9 Cluster: DNA-DIRECTED RNA POLYMERASE I; n=1;
Encephalitozoon cuniculi|Rep: DNA-DIRECTED RNA
POLYMERASE I - Encephalitozoon cuniculi
Length = 305
Score = 37.1 bits (82), Expect = 0.39
Identities = 23/70 (32%), Positives = 38/70 (54%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
A+ + L+ N +V DEF+AHR+GL+PL D + ++ + + S+ FTLDV
Sbjct: 69 AVRDIFLKENESVFPDEFIAHRLGLVPLEVDP--EMFEFAGE----ELDERNSLRFTLDV 122
Query: 436 KCTDEQTRHV 465
+ E +V
Sbjct: 123 RNESEGVLNV 132
>UniRef50_Q0DY01 Cluster: Os02g0723600 protein; n=3; Oryza
sativa|Rep: Os02g0723600 protein - Oryza sativa subsp.
japonica (Rice)
Length = 327
Score = 36.7 bits (81), Expect = 0.52
Identities = 16/31 (51%), Positives = 25/31 (80%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISD 348
AI+ V + N++V++DE L+HR+GLIPL +D
Sbjct: 109 AIEKVLMVDNTSVIADEVLSHRLGLIPLDAD 139
>UniRef50_Q7QVM7 Cluster: GLP_305_30255_31307; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_305_30255_31307 - Giardia lamblia
ATCC 50803
Length = 350
Score = 36.7 bits (81), Expect = 0.52
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISD 348
AID V + NS++++DE +HR+GL+P+ D
Sbjct: 70 AIDTVVVHENSSIIADEIFSHRLGLVPMNID 100
>UniRef50_Q4DDL2 Cluster: DNA-directed RNA polymerase, alpha
subunit, putative; n=4; Trypanosoma|Rep: DNA-directed
RNA polymerase, alpha subunit, putative - Trypanosoma
cruzi
Length = 393
Score = 36.7 bits (81), Expect = 0.52
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPL 339
A D + +E N +V+ DE LAHRIGL+P+
Sbjct: 130 AFDRMLIEENDSVVPDELLAHRIGLVPI 157
>UniRef50_UPI00015B4B82 Cluster: PREDICTED: similar to bifunctional
aminoacyl-tRNA synthetase; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to bifunctional aminoacyl-tRNA
synthetase - Nasonia vitripennis
Length = 1549
Score = 35.5 bits (78), Expect = 1.2
Identities = 15/31 (48%), Positives = 24/31 (77%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISD 348
AI+ V + N++++ DE LAHR+GL+PL +D
Sbjct: 1288 AIEKVYMINNTSLIQDEVLAHRLGLLPLKAD 1318
>UniRef50_Q3LWA1 Cluster: DNA-directed RNA polymerase I 40kDa
subunit; n=1; Bigelowiella natans|Rep: DNA-directed RNA
polymerase I 40kDa subunit - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 293
Score = 35.1 bits (77), Expect = 1.6
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPL 339
AI+ + + N+++L+D LAHRIGLIPL
Sbjct: 67 AIEDIYVFENTSILNDNILAHRIGLIPL 94
>UniRef50_Q2UFF5 Cluster: RNA polymerase I and III; n=3;
Pezizomycotina|Rep: RNA polymerase I and III -
Aspergillus oryzae
Length = 373
Score = 35.1 bits (77), Expect = 1.6
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSR 378
AI++V + N++V+ DE LA R+GLIPL VD I + R
Sbjct: 91 AIEFVFVHNNTSVIQDEVLAQRLGLIPLKGS--VDGINWMR 129
>UniRef50_Q98S79 Cluster: DNA-directed RNA polymerase 40k chain;
n=1; Guillardia theta|Rep: DNA-directed RNA polymerase
40k chain - Guillardia theta (Cryptomonas phi)
Length = 339
Score = 34.7 bits (76), Expect = 2.1
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPL 339
+I+ V + NSTV DE ++HR+GL+P+
Sbjct: 89 SIEKVYIYKNSTVFGDEIISHRLGLVPI 116
>UniRef50_Q4YX04 Cluster: DNA-directed RNA polymerase I, putative;
n=7; Plasmodium|Rep: DNA-directed RNA polymerase I,
putative - Plasmodium berghei
Length = 334
Score = 34.7 bits (76), Expect = 2.1
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISD-DVVD-KIRYSRDCMCVDFCSECSVEFTL 429
AI+ V + N+ V++DE L HR+GLIP D D+++ K + + FC F L
Sbjct: 87 AIEKVNIFQNTGVIADEILCHRLGLIPFKFDADLINFKDTHEKYNNLNCFC------FKL 140
Query: 430 DVKCTDEQTRHVTNC*FEIERS*S---CPFTSRHRDEDQADYGEA--DEILIH*VTQGSG 594
VKC + N ++ S CP + + +++ + D ILI G+G
Sbjct: 141 HVKCNSINNNKIGNENYQCIYSKDLKWCPLNEEQKIKFESNPPKVVDDNILI--TKLGNG 198
Query: 595 IEASGIC 615
E IC
Sbjct: 199 QEIELIC 205
>UniRef50_Q4PBM5 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 320
Score = 34.7 bits (76), Expect = 2.1
Identities = 16/35 (45%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPL-ISDDVV 357
AI+ V + N++++ DE L+HR+GL+PL I+ D V
Sbjct: 132 AIEHVYIWNNTSIIQDEVLSHRLGLVPLAINPDKV 166
>UniRef50_Q97B93 Cluster: DNA-directed RNA polymerase subunit D;
n=4; Thermoplasmatales|Rep: DNA-directed RNA polymerase
subunit D - Thermoplasma volcanium
Length = 271
Score = 34.7 bits (76), Expect = 2.1
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 283 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMC-VDFCSECSVEFTLD 432
+S L DE +AHR+GLIPL +D + + C C CS C+V ++++
Sbjct: 61 SSLPLFDEMVAHRLGLIPLKTD---LSLNFRDQCSCGGKGCSLCTVTYSIN 108
>UniRef50_Q57648 Cluster: DNA-directed RNA polymerase subunit D;
n=6; Methanococcales|Rep: DNA-directed RNA polymerase
subunit D - Methanococcus jannaschii
Length = 191
Score = 34.7 bits (76), Expect = 2.1
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPL 339
AI+ V + NS+ + DE LAHR+GLIP+
Sbjct: 42 AIEDVYIYENSSSMDDEILAHRLGLIPI 69
>UniRef50_Q9UAY9 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 366
Score = 34.3 bits (75), Expect = 2.8
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISD 348
A++ + L N++V+ DE L HR+GL+PL D
Sbjct: 95 ALEKIYLYQNTSVIQDEVLCHRLGLLPLRVD 125
>UniRef50_Q4X0E8 Cluster: DNA-directed RNA polymerase I and III
subunit Rpc40, putative; n=5; Pezizomycotina|Rep:
DNA-directed RNA polymerase I and III subunit Rpc40,
putative - Aspergillus fumigatus (Sartorya fumigata)
Length = 374
Score = 34.3 bits (75), Expect = 2.8
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPL 339
AI++V + N++V+ DE LA R+GLIPL
Sbjct: 91 AIEYVFVHNNTSVIQDEVLASRLGLIPL 118
>UniRef50_A1RWW0 Cluster: RNA polymerase, insert precursor; n=1;
Thermofilum pendens Hrk 5|Rep: RNA polymerase, insert
precursor - Thermofilum pendens (strain Hrk 5)
Length = 283
Score = 34.3 bits (75), Expect = 2.8
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPL-ISDDVVDKIR 369
AID V + N++ L DE +AHR+ L+PL I + D +R
Sbjct: 36 AIDEVIVTENTSALWDEMIAHRLALVPLKIDPETYDALR 74
>UniRef50_Q014V0 Cluster: RNA polymerase subunit; n=2;
Ostreococcus|Rep: RNA polymerase subunit - Ostreococcus
tauri
Length = 382
Score = 33.9 bits (74), Expect = 3.7
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISD 348
AI+ V + N++V+ DE AHR+GL+P+ +D
Sbjct: 110 AIEKVYMINNTSVVPDEVFAHRLGLVPIKAD 140
>UniRef50_Q5KIG6 Cluster: Putative uncharacterized protein; n=1;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 350
Score = 33.9 bits (74), Expect = 3.7
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISD 348
AI+ V + N++++ DE L HR+GL+PL D
Sbjct: 86 AIEEVYVWNNTSIMQDEVLCHRVGLVPLKID 116
>UniRef50_Q4A280 Cluster: Putative DNA-directed RNA polymerase
subunit; n=1; Emiliania huxleyi virus 86|Rep: Putative
DNA-directed RNA polymerase subunit - Emiliania huxleyi
virus 86
Length = 229
Score = 33.5 bits (73), Expect = 4.8
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1
Query: 268 VQLEANSTVLSDEFLAHRIGLIPLISD 348
V + N++V E LAHRIGL+P+IS+
Sbjct: 44 VTIHKNTSVYPCELLAHRIGLVPIISE 70
>UniRef50_A2ER03 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation
domain containing protein; n=1; Trichomonas vaginalis
G3|Rep: RNA polymerase Rpb3/Rpb11 dimerisation domain
containing protein - Trichomonas vaginalis G3
Length = 341
Score = 33.5 bits (73), Expect = 4.8
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISD 348
AI+ V + N+ V+ DE L HR+GLIP+ +D
Sbjct: 73 AIELVGMLDNTGVMPDEVLCHRLGLIPINAD 103
>UniRef50_A5UN55 Cluster: DNA-directed RNA polymerase, subunit D,
RpoD; n=1; Methanobrevibacter smithii ATCC 35061|Rep:
DNA-directed RNA polymerase, subunit D, RpoD -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 274
Score = 33.5 bits (73), Expect = 4.8
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISD-DVVDKIRYSRDCMCVDFCSECSVEFTL 429
AI+ V + N + + +E LAHR+GL PL+S+ D ++ + D D+ SV F+L
Sbjct: 40 AIEDVNIMRNDSAMFNEVLAHRLGLTPLVSNMDAIEGLPLPGD---DDYEENNSVMFSL 95
>UniRef50_Q89DV5 Cluster: Blr7332 protein; n=2; Proteobacteria|Rep:
Blr7332 protein - Bradyrhizobium japonicum
Length = 150
Score = 32.7 bits (71), Expect = 8.4
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 250 NKAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCS 405
+K +DWV + ++ AH IG IP+ DD + + RD +C S
Sbjct: 19 HKGVDWVSPDTPIAEIAKLMRAHDIGCIPIGEDDKLVGMVTDRDIVCKGLAS 70
>UniRef50_Q4QDF5 Cluster: DNA-directed RNA polymerase, alpha
subunit, putative; n=3; Leishmania|Rep: DNA-directed RNA
polymerase, alpha subunit, putative - Leishmania major
Length = 442
Score = 32.7 bits (71), Expect = 8.4
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPL 339
A D V +E N + + DE L+HR+GL+P+
Sbjct: 147 AFDRVLIEENDSPVLDELLSHRLGLVPV 174
>UniRef50_A7RR02 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 638
Score = 32.7 bits (71), Expect = 8.4
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +3
Query: 12 QVDCLEVLFVIYFVIY*MVLVSLKRNLIH*I--RFKKQKMPYANQPSVHITELSDEN 176
++DCL + ++ V ++S R++++ RFKK K + QP++++ +SD N
Sbjct: 242 EIDCLALADKLFAVASDREVLSRNRHVLYSFVKRFKKLKSGHTGQPNLNVDSMSDSN 298
>UniRef50_Q8U0E4 Cluster: DNA-directed RNA polymerase subunit D;
n=5; Thermococcaceae|Rep: DNA-directed RNA polymerase
subunit D - Pyrococcus furiosus
Length = 261
Score = 32.7 bits (71), Expect = 8.4
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPL 339
A+D V+ N + L DE +AHR+ +IPL
Sbjct: 43 AVDEVEFYENDSALFDEIIAHRLAMIPL 70
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 658,478,847
Number of Sequences: 1657284
Number of extensions: 12778319
Number of successful extensions: 27773
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 26832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27744
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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