Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0056
         (678 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   4.0  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   9.3  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   9.3  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 412 CIRNKNQHTC 383
           C++NKNQ+ C
Sbjct: 114 CVQNKNQYQC 123


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 5/14 (35%), Positives = 8/14 (57%)
 Frame = -3

Query: 268 PNRWPCWCFSDKYA 227
           P  WP W +  +Y+
Sbjct: 187 PMLWPAWVYCTRYS 200


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 391 VDFCSECSVEFTLDVKCTDEQTRHVT 468
           VD C +   +FTL+ + +DE  + ++
Sbjct: 701 VDRCYKMQEQFTLNFRNSDELIKFIS 726


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,727
Number of Sequences: 336
Number of extensions: 3462
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)