Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0056
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0053 + 873918-874411,875255-875492,875682-875702                 73   2e-13
03_02_0668 - 10290541-10290644,10290777-10290911,10291812-102919...    37   0.013
02_05_0574 - 30086264-30086367,30087653-30087746,30088293-300885...    37   0.017
02_05_0938 + 32901143-32901215,32901841-32901982,32902243-329023...    30   2.0  
02_02_0064 + 6485145-6487884,6487900-6488247,6488343-6488722           29   2.6  
10_08_0727 - 20133293-20135701                                         28   6.0  

>09_01_0053 + 873918-874411,875255-875492,875682-875702
          Length = 250

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 40/76 (52%), Positives = 52/76 (68%), Gaps = 4/76 (5%)
 Frame = +1

Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVD---FCSECSVEFT 426
           AID V++E NS+VL+DEF+AHR+GLIPL S   +  +R+SRDC   D    C  CSVEF 
Sbjct: 53  AIDLVEIEVNSSVLNDEFIAHRLGLIPLTSAAAM-AMRFSRDCDACDGDGSCEYCSVEFH 111

Query: 427 LDVKCTD-EQTRHVTN 471
           L  + TD +QT  VT+
Sbjct: 112 LAARATDSDQTLEVTS 127



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
 Frame = +2

Query: 476 DLKSSDPRVVPLHHDIEMK-----TRPI----MVKQMKY*FIKLRKGQELKLRAYAKKGF 628
           DL+S+DP+V P+      +     T P        Q     +KLR+GQEL+LRA A+KG 
Sbjct: 129 DLRSTDPKVCPVDQARAYQHALGGTEPFDTAAAADQRGILIVKLRRGQELRLRAIARKGI 188

Query: 629 GERACK 646
           G+   K
Sbjct: 189 GKDHAK 194


>03_02_0668 -
           10290541-10290644,10290777-10290911,10291812-10291905,
           10291994-10292089,10292458-10292639,10293578-10293658,
           10293746-10293875,10293996-10294181,10294567-10294692
          Length = 377

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 16/31 (51%), Positives = 25/31 (80%)
 Frame = +1

Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISD 348
           AI+ V +  N++V++DE L+HR+GLIPL +D
Sbjct: 109 AIEKVLMADNTSVIADEVLSHRLGLIPLDAD 139


>02_05_0574 -
           30086264-30086367,30087653-30087746,30088293-30088555,
           30089122-30089202,30089293-30089422,30089545-30089730,
           30090013-30090138
          Length = 327

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 16/31 (51%), Positives = 25/31 (80%)
 Frame = +1

Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISD 348
           AI+ V +  N++V++DE L+HR+GLIPL +D
Sbjct: 109 AIEKVLMVDNTSVIADEVLSHRLGLIPLDAD 139


>02_05_0938 +
           32901143-32901215,32901841-32901982,32902243-32902314,
           32902573-32902644,32902711-32902782,32902913-32902948,
           32903001-32903072,32903319-32903387,32903483-32903554,
           32903668-32903739,32903838-32903909,32904153-32904224,
           32904470-32904541,32904623-32904694,32904782-32904853,
           32904911-32905003,32905150-32905218,32905315-32905386,
           32905479-32905552,32905643-32905771,32905966-32906331,
           32906584-32906954,32907522-32907890
          Length = 884

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = -2

Query: 449 SSVHFTSNVNSTLHSEQKSTHMQSREYLILSTTSSDMSGMRPMRCAKNSSLKTVELASN 273
           S++H+ +  N+ L              + L+ +S+ +SG  P+  AK  +L T++L+ N
Sbjct: 270 STLHYLNLANNNLEGPIPDNISSCMNLISLNLSSNYLSGAIPIELAKMKNLDTLDLSCN 328


>02_02_0064 + 6485145-6487884,6487900-6488247,6488343-6488722
          Length = 1155

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = -2

Query: 494 DRSISNQQLVTCLVCSSVHFTSNVNSTLHSEQKSTHMQSREYLILSTTSSDMSGMRPMRC 315
           D +IS +   T   C S+ + +   + +      +  Q R  L+L  + +++SG  P   
Sbjct: 667 DNTISGKIPTTIGECQSLQYLNLSRNFIEDTIPPSLEQLRGLLVLDLSQNNLSGTIPRFL 726

Query: 314 AKNSSLKTVELASN 273
              + L T+ L+SN
Sbjct: 727 GSMTGLSTLNLSSN 740


>10_08_0727 - 20133293-20135701
          Length = 802

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 646 FACSFPKTFFGICPKLQFLTLA 581
           F+   P T FG CP+L++++LA
Sbjct: 165 FSGEIPATLFGECPRLRYVSLA 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,607,746
Number of Sequences: 37544
Number of extensions: 347329
Number of successful extensions: 720
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)