Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0056
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21440| Best HMM Match : RNA_pol_A_bac (HMM E-Value=0.0073)          30   1.5  
SB_40270| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_29407| Best HMM Match : TP2 (HMM E-Value=0.21)                      29   2.6  
SB_52304| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_57004| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_21440| Best HMM Match : RNA_pol_A_bac (HMM E-Value=0.0073)
          Length = 287

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = +1

Query: 259 IDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVK 438
           ID     A   +L  E LAHR+GLIP+ +D  +   +   D    D   + ++ F L VK
Sbjct: 175 IDASVANAFRRILLAEVLAHRLGLIPIHADPRLFNYKKQGDEEAQD---DTTLVFELKVK 231

Query: 439 C 441
           C
Sbjct: 232 C 232


>SB_40270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +3

Query: 618 KKVLGKEHAKWNPTGWV 668
           KK   KEHAKWNPT  V
Sbjct: 9   KKGFAKEHAKWNPTAGV 25



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 593 ELKLRAYAKKGFGERACK 646
           ELKLRA+AKKGF +   K
Sbjct: 1   ELKLRAFAKKGFAKEHAK 18


>SB_29407| Best HMM Match : TP2 (HMM E-Value=0.21)
          Length = 215

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 407 SEQKSTHMQSREYLILSTTSSDMSGMRPMRCAKNSSLKTVE 285
           + QKST     +   L TT+ D S  R + C K   + TVE
Sbjct: 69  NRQKSTRRSDGDMPALGTTAQDNSSQRSIPCTKPFGIFTVE 109


>SB_52304| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 769

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -2

Query: 410 HSEQKSTHMQSREYLILSTTSSDMSGMRPMRCAKNSSLKTVELASNCTQSMA 255
           HSEQ+       E  +       ++G R   C ++S LKT E+ S+    +A
Sbjct: 516 HSEQRDAMFDEMERRLTEELHRAIAGWRTKMCQRDSVLKTDEVLSSVVVRLA 567


>SB_57004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
 Frame = -2

Query: 470 LVTCLVCSSVH--FTSNVNSTLHSEQKSTHMQSREYLILSTTSSDMSGMRPMRCAKNSSL 297
           L TC +C+  H  F      T+HS  ++   Q+  +  L  T + M   +   C +   L
Sbjct: 79  LKTCTLCTQTHAHFALKHTHTMHSNTRTLCTQTHAHNALKHTHTTMHSNKRTLCTQTHPL 138

Query: 296 KTVELASNCTQSMA 255
             V       Q +A
Sbjct: 139 YAVRFFHAIGQLLA 152


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,957,911
Number of Sequences: 59808
Number of extensions: 425208
Number of successful extensions: 917
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)