Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0056
(678 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
J05448-1|AAA36586.1| 275|Homo sapiens protein ( Human RNA polym... 153 4e-37
CR542041-1|CAG46838.1| 275|Homo sapiens POLR2C protein. 153 4e-37
BC028157-1|AAH28157.1| 275|Homo sapiens polymerase (RNA) II (DN... 153 4e-37
BC003159-1|AAH03159.1| 275|Homo sapiens polymerase (RNA) II (DN... 153 4e-37
BC000409-1|AAH00409.1| 275|Homo sapiens polymerase (RNA) II (DN... 153 4e-37
AJ224144-1|CAA11843.1| 275|Homo sapiens RNA polymerase subunit ... 153 4e-37
AJ224143-1|CAA11842.1| 275|Homo sapiens RNA polymerase II subun... 153 4e-37
AF008443-1|AAC14355.1| 275|Homo sapiens RNA polymerase II subun... 153 4e-37
AC004382-7|AAC24309.1| 275|Homo sapiens RNA polymerase II subun... 153 4e-37
BC008863-1|AAH08863.1| 346|Homo sapiens polymerase (RNA) I poly... 39 0.014
BC008118-1|AAH08118.1| 338|Homo sapiens POLR1C protein protein. 39 0.014
AL355802-12|CAI42629.1| 346|Homo sapiens RP3-337H4.4 protein. 39 0.014
AL355802-11|CAI42628.1| 314|Homo sapiens RP3-337H4.4 protein. 39 0.014
AF008442-1|AAC14354.1| 346|Homo sapiens RNA polymerase I subuni... 39 0.014
AL355802-13|CAI42630.1| 139|Homo sapiens RP3-337H4.4 protein. 36 0.17
AL356072-1|CAH70515.2| 782|Homo sapiens solute carrier family 4... 31 5.0
AF118274-1|AAD27583.1| 533|Homo sapiens DNb-5 protein. 31 5.0
BC132671-1|AAI32672.1| 802|Homo sapiens threonyl-tRNA synthetas... 30 6.6
AK056653-1|BAB71241.1| 707|Homo sapiens protein ( Homo sapiens ... 30 6.6
>J05448-1|AAA36586.1| 275|Homo sapiens protein ( Human RNA
polymerase subunit hRPB 33, mRNA. ).
Length = 275
Score = 153 bits (372), Expect = 4e-37
Identities = 71/124 (57%), Positives = 90/124 (72%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AIDWVQ++ANS+VL DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV
Sbjct: 46 AIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDV 105
Query: 436 KCTDEQTRHVTNC*FEIERS*SCPFTSRHRDEDQADYGEADEILIH*VTQGSGIEASGIC 615
+C ++QTRHVT+ P TSR+RD D DY E D+ILI + +G +
Sbjct: 106 RCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYA 165
Query: 616 QKRF 627
+K F
Sbjct: 166 KKGF 169
Score = 54.4 bits (125), Expect = 4e-07
Identities = 22/30 (73%), Positives = 29/30 (96%)
Frame = +3
Query: 123 MPYANQPSVHITELSDENVKFVVEDTELSV 212
MPYANQP+V ITEL+DENVKF++E+T+L+V
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAV 30
Score = 52.4 bits (120), Expect = 1e-06
Identities = 28/57 (49%), Positives = 35/57 (61%)
Frame = +2
Query: 476 DLKSSDPRVVPLHHDIEMKTRPIMVKQMKY*FIKLRKGQELKLRAYAKKGFGERACK 646
DL S+ PRV+P+ V+Q +KLRKGQEL+LRAYAKKGFG+ K
Sbjct: 119 DLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +3
Query: 618 KKVLGKEHAKWNPTGWV 668
KK GKEHAKWNPT V
Sbjct: 166 KKGFGKEHAKWNPTAGV 182
>CR542041-1|CAG46838.1| 275|Homo sapiens POLR2C protein.
Length = 275
Score = 153 bits (372), Expect = 4e-37
Identities = 71/124 (57%), Positives = 90/124 (72%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AIDWVQ++ANS+VL DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV
Sbjct: 46 AIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDV 105
Query: 436 KCTDEQTRHVTNC*FEIERS*SCPFTSRHRDEDQADYGEADEILIH*VTQGSGIEASGIC 615
+C ++QTRHVT+ P TSR+RD D DY E D+ILI + +G +
Sbjct: 106 RCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYA 165
Query: 616 QKRF 627
+K F
Sbjct: 166 KKGF 169
Score = 54.4 bits (125), Expect = 4e-07
Identities = 22/30 (73%), Positives = 29/30 (96%)
Frame = +3
Query: 123 MPYANQPSVHITELSDENVKFVVEDTELSV 212
MPYANQP+V ITEL+DENVKF++E+T+L+V
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAV 30
Score = 52.4 bits (120), Expect = 1e-06
Identities = 28/57 (49%), Positives = 35/57 (61%)
Frame = +2
Query: 476 DLKSSDPRVVPLHHDIEMKTRPIMVKQMKY*FIKLRKGQELKLRAYAKKGFGERACK 646
DL S+ PRV+P+ V+Q +KLRKGQEL+LRAYAKKGFG+ K
Sbjct: 119 DLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +3
Query: 618 KKVLGKEHAKWNPTGWV 668
KK GKEHAKWNPT V
Sbjct: 166 KKGFGKEHAKWNPTAGV 182
>BC028157-1|AAH28157.1| 275|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide C, 33kDa protein.
Length = 275
Score = 153 bits (372), Expect = 4e-37
Identities = 71/124 (57%), Positives = 90/124 (72%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AIDWVQ++ANS+VL DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV
Sbjct: 46 AIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDV 105
Query: 436 KCTDEQTRHVTNC*FEIERS*SCPFTSRHRDEDQADYGEADEILIH*VTQGSGIEASGIC 615
+C ++QTRHVT+ P TSR+RD D DY E D+ILI + +G +
Sbjct: 106 RCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYA 165
Query: 616 QKRF 627
+K F
Sbjct: 166 KKGF 169
Score = 54.4 bits (125), Expect = 4e-07
Identities = 22/30 (73%), Positives = 29/30 (96%)
Frame = +3
Query: 123 MPYANQPSVHITELSDENVKFVVEDTELSV 212
MPYANQP+V ITEL+DENVKF++E+T+L+V
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAV 30
Score = 52.4 bits (120), Expect = 1e-06
Identities = 28/57 (49%), Positives = 35/57 (61%)
Frame = +2
Query: 476 DLKSSDPRVVPLHHDIEMKTRPIMVKQMKY*FIKLRKGQELKLRAYAKKGFGERACK 646
DL S+ PRV+P+ V+Q +KLRKGQEL+LRAYAKKGFG+ K
Sbjct: 119 DLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +3
Query: 618 KKVLGKEHAKWNPTGWV 668
KK GKEHAKWNPT V
Sbjct: 166 KKGFGKEHAKWNPTAGV 182
>BC003159-1|AAH03159.1| 275|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide C, 33kDa protein.
Length = 275
Score = 153 bits (372), Expect = 4e-37
Identities = 71/124 (57%), Positives = 90/124 (72%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AIDWVQ++ANS+VL DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV
Sbjct: 46 AIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDV 105
Query: 436 KCTDEQTRHVTNC*FEIERS*SCPFTSRHRDEDQADYGEADEILIH*VTQGSGIEASGIC 615
+C ++QTRHVT+ P TSR+RD D DY E D+ILI + +G +
Sbjct: 106 RCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYA 165
Query: 616 QKRF 627
+K F
Sbjct: 166 KKGF 169
Score = 54.4 bits (125), Expect = 4e-07
Identities = 22/30 (73%), Positives = 29/30 (96%)
Frame = +3
Query: 123 MPYANQPSVHITELSDENVKFVVEDTELSV 212
MPYANQP+V ITEL+DENVKF++E+T+L+V
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAV 30
Score = 52.4 bits (120), Expect = 1e-06
Identities = 28/57 (49%), Positives = 35/57 (61%)
Frame = +2
Query: 476 DLKSSDPRVVPLHHDIEMKTRPIMVKQMKY*FIKLRKGQELKLRAYAKKGFGERACK 646
DL S+ PRV+P+ V+Q +KLRKGQEL+LRAYAKKGFG+ K
Sbjct: 119 DLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +3
Query: 618 KKVLGKEHAKWNPTGWV 668
KK GKEHAKWNPT V
Sbjct: 166 KKGFGKEHAKWNPTAGV 182
>BC000409-1|AAH00409.1| 275|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide C, 33kDa protein.
Length = 275
Score = 153 bits (372), Expect = 4e-37
Identities = 71/124 (57%), Positives = 90/124 (72%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AIDWVQ++ANS+VL DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV
Sbjct: 46 AIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDV 105
Query: 436 KCTDEQTRHVTNC*FEIERS*SCPFTSRHRDEDQADYGEADEILIH*VTQGSGIEASGIC 615
+C ++QTRHVT+ P TSR+RD D DY E D+ILI + +G +
Sbjct: 106 RCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYA 165
Query: 616 QKRF 627
+K F
Sbjct: 166 KKGF 169
Score = 54.4 bits (125), Expect = 4e-07
Identities = 22/30 (73%), Positives = 29/30 (96%)
Frame = +3
Query: 123 MPYANQPSVHITELSDENVKFVVEDTELSV 212
MPYANQP+V ITEL+DENVKF++E+T+L+V
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAV 30
Score = 52.4 bits (120), Expect = 1e-06
Identities = 28/57 (49%), Positives = 35/57 (61%)
Frame = +2
Query: 476 DLKSSDPRVVPLHHDIEMKTRPIMVKQMKY*FIKLRKGQELKLRAYAKKGFGERACK 646
DL S+ PRV+P+ V+Q +KLRKGQEL+LRAYAKKGFG+ K
Sbjct: 119 DLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +3
Query: 618 KKVLGKEHAKWNPTGWV 668
KK GKEHAKWNPT V
Sbjct: 166 KKGFGKEHAKWNPTAGV 182
>AJ224144-1|CAA11843.1| 275|Homo sapiens RNA polymerase subunit
protein.
Length = 275
Score = 153 bits (372), Expect = 4e-37
Identities = 71/124 (57%), Positives = 90/124 (72%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AIDWVQ++ANS+VL DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV
Sbjct: 46 AIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDV 105
Query: 436 KCTDEQTRHVTNC*FEIERS*SCPFTSRHRDEDQADYGEADEILIH*VTQGSGIEASGIC 615
+C ++QTRHVT+ P TSR+RD D DY E D+ILI + +G +
Sbjct: 106 RCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYA 165
Query: 616 QKRF 627
+K F
Sbjct: 166 KKGF 169
Score = 54.4 bits (125), Expect = 4e-07
Identities = 22/30 (73%), Positives = 29/30 (96%)
Frame = +3
Query: 123 MPYANQPSVHITELSDENVKFVVEDTELSV 212
MPYANQP+V ITEL+DENVKF++E+T+L+V
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAV 30
Score = 52.4 bits (120), Expect = 1e-06
Identities = 28/57 (49%), Positives = 35/57 (61%)
Frame = +2
Query: 476 DLKSSDPRVVPLHHDIEMKTRPIMVKQMKY*FIKLRKGQELKLRAYAKKGFGERACK 646
DL S+ PRV+P+ V+Q +KLRKGQEL+LRAYAKKGFG+ K
Sbjct: 119 DLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +3
Query: 618 KKVLGKEHAKWNPTGWV 668
KK GKEHAKWNPT V
Sbjct: 166 KKGFGKEHAKWNPTAGV 182
>AJ224143-1|CAA11842.1| 275|Homo sapiens RNA polymerase II subunit
protein.
Length = 275
Score = 153 bits (372), Expect = 4e-37
Identities = 71/124 (57%), Positives = 90/124 (72%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AIDWVQ++ANS+VL DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV
Sbjct: 46 AIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDV 105
Query: 436 KCTDEQTRHVTNC*FEIERS*SCPFTSRHRDEDQADYGEADEILIH*VTQGSGIEASGIC 615
+C ++QTRHVT+ P TSR+RD D DY E D+ILI + +G +
Sbjct: 106 RCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYA 165
Query: 616 QKRF 627
+K F
Sbjct: 166 KKGF 169
Score = 54.4 bits (125), Expect = 4e-07
Identities = 22/30 (73%), Positives = 29/30 (96%)
Frame = +3
Query: 123 MPYANQPSVHITELSDENVKFVVEDTELSV 212
MPYANQP+V ITEL+DENVKF++E+T+L+V
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAV 30
Score = 52.4 bits (120), Expect = 1e-06
Identities = 28/57 (49%), Positives = 35/57 (61%)
Frame = +2
Query: 476 DLKSSDPRVVPLHHDIEMKTRPIMVKQMKY*FIKLRKGQELKLRAYAKKGFGERACK 646
DL S+ PRV+P+ V+Q +KLRKGQEL+LRAYAKKGFG+ K
Sbjct: 119 DLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +3
Query: 618 KKVLGKEHAKWNPTGWV 668
KK GKEHAKWNPT V
Sbjct: 166 KKGFGKEHAKWNPTAGV 182
>AF008443-1|AAC14355.1| 275|Homo sapiens RNA polymerase II subunit
hRPB33 protein.
Length = 275
Score = 153 bits (372), Expect = 4e-37
Identities = 71/124 (57%), Positives = 90/124 (72%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AIDWVQ++ANS+VL DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV
Sbjct: 46 AIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDV 105
Query: 436 KCTDEQTRHVTNC*FEIERS*SCPFTSRHRDEDQADYGEADEILIH*VTQGSGIEASGIC 615
+C ++QTRHVT+ P TSR+RD D DY E D+ILI + +G +
Sbjct: 106 RCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYA 165
Query: 616 QKRF 627
+K F
Sbjct: 166 KKGF 169
Score = 54.4 bits (125), Expect = 4e-07
Identities = 22/30 (73%), Positives = 29/30 (96%)
Frame = +3
Query: 123 MPYANQPSVHITELSDENVKFVVEDTELSV 212
MPYANQP+V ITEL+DENVKF++E+T+L+V
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAV 30
Score = 52.4 bits (120), Expect = 1e-06
Identities = 28/57 (49%), Positives = 35/57 (61%)
Frame = +2
Query: 476 DLKSSDPRVVPLHHDIEMKTRPIMVKQMKY*FIKLRKGQELKLRAYAKKGFGERACK 646
DL S+ PRV+P+ V+Q +KLRKGQEL+LRAYAKKGFG+ K
Sbjct: 119 DLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +3
Query: 618 KKVLGKEHAKWNPTGWV 668
KK GKEHAKWNPT V
Sbjct: 166 KKGFGKEHAKWNPTAGV 182
>AC004382-7|AAC24309.1| 275|Homo sapiens RNA polymerase II subunit
hRPB33 protein.
Length = 275
Score = 153 bits (372), Expect = 4e-37
Identities = 71/124 (57%), Positives = 90/124 (72%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AIDWVQ++ANS+VL DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV
Sbjct: 46 AIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDV 105
Query: 436 KCTDEQTRHVTNC*FEIERS*SCPFTSRHRDEDQADYGEADEILIH*VTQGSGIEASGIC 615
+C ++QTRHVT+ P TSR+RD D DY E D+ILI + +G +
Sbjct: 106 RCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYA 165
Query: 616 QKRF 627
+K F
Sbjct: 166 KKGF 169
Score = 54.4 bits (125), Expect = 4e-07
Identities = 22/30 (73%), Positives = 29/30 (96%)
Frame = +3
Query: 123 MPYANQPSVHITELSDENVKFVVEDTELSV 212
MPYANQP+V ITEL+DENVKF++E+T+L+V
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAV 30
Score = 52.4 bits (120), Expect = 1e-06
Identities = 28/57 (49%), Positives = 35/57 (61%)
Frame = +2
Query: 476 DLKSSDPRVVPLHHDIEMKTRPIMVKQMKY*FIKLRKGQELKLRAYAKKGFGERACK 646
DL S+ PRV+P+ V+Q +KLRKGQEL+LRAYAKKGFG+ K
Sbjct: 119 DLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAK 175
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +3
Query: 618 KKVLGKEHAKWNPTGWV 668
KK GKEHAKWNPT V
Sbjct: 166 KKGFGKEHAKWNPTAGV 182
>BC008863-1|AAH08863.1| 346|Homo sapiens polymerase (RNA) I
polypeptide C, 30kDa protein.
Length = 346
Score = 39.1 bits (87), Expect = 0.014
Identities = 21/63 (33%), Positives = 38/63 (60%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
A++ V + N++++ DE LAHR+GLIP+ +D + + R D + +++F L V
Sbjct: 88 AVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQV 144
Query: 436 KCT 444
+CT
Sbjct: 145 RCT 147
>BC008118-1|AAH08118.1| 338|Homo sapiens POLR1C protein protein.
Length = 338
Score = 39.1 bits (87), Expect = 0.014
Identities = 21/63 (33%), Positives = 38/63 (60%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
A++ V + N++++ DE LAHR+GLIP+ +D + + R D + +++F L V
Sbjct: 80 AVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQV 136
Query: 436 KCT 444
+CT
Sbjct: 137 RCT 139
>AL355802-12|CAI42629.1| 346|Homo sapiens RP3-337H4.4 protein.
Length = 346
Score = 39.1 bits (87), Expect = 0.014
Identities = 21/63 (33%), Positives = 38/63 (60%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
A++ V + N++++ DE LAHR+GLIP+ +D + + R D + +++F L V
Sbjct: 88 AVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQV 144
Query: 436 KCT 444
+CT
Sbjct: 145 RCT 147
>AL355802-11|CAI42628.1| 314|Homo sapiens RP3-337H4.4 protein.
Length = 314
Score = 39.1 bits (87), Expect = 0.014
Identities = 21/63 (33%), Positives = 38/63 (60%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
A++ V + N++++ DE LAHR+GLIP+ +D + + R D + +++F L V
Sbjct: 88 AVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQV 144
Query: 436 KCT 444
+CT
Sbjct: 145 RCT 147
>AF008442-1|AAC14354.1| 346|Homo sapiens RNA polymerase I subunit
hRPA39 protein.
Length = 346
Score = 39.1 bits (87), Expect = 0.014
Identities = 21/63 (33%), Positives = 38/63 (60%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
A++ V + N++++ DE LAHR+GLIP+ +D + + R D + +++F L V
Sbjct: 88 AVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQV 144
Query: 436 KCT 444
+CT
Sbjct: 145 RCT 147
>AL355802-13|CAI42630.1| 139|Homo sapiens RP3-337H4.4 protein.
Length = 139
Score = 35.5 bits (78), Expect = 0.17
Identities = 14/31 (45%), Positives = 24/31 (77%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISD 348
A++ V + N++++ DE LAHR+GLIP+ +D
Sbjct: 87 AVEKVLVYNNTSIVQDEILAHRLGLIPIHAD 117
>AL356072-1|CAH70515.2| 782|Homo sapiens solute carrier family 45,
member 1 protein.
Length = 782
Score = 30.7 bits (66), Expect = 5.0
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -1
Query: 567 QYFICFTIIGLVFISMS*CKGTTLGSLDFKSAVGYMSCLFICAFYV 430
QYF+ ++ LV ++ G+ G + F S V ++ CL+ F +
Sbjct: 717 QYFLAQILVSLVLGPLTSAVGSANGVMYFSSLVSFLGCLYSSLFVI 762
>AF118274-1|AAD27583.1| 533|Homo sapiens DNb-5 protein.
Length = 533
Score = 30.7 bits (66), Expect = 5.0
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -1
Query: 567 QYFICFTIIGLVFISMS*CKGTTLGSLDFKSAVGYMSCLFICAFYV 430
QYF+ ++ LV ++ G+ G + F S V ++ CL+ F +
Sbjct: 468 QYFLAQILVSLVLGPLTSAVGSANGVMYFSSLVSFLGCLYSSLFVI 513
>BC132671-1|AAI32672.1| 802|Homo sapiens threonyl-tRNA
synthetase-like 2 protein.
Length = 802
Score = 30.3 bits (65), Expect = 6.6
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 518 DIEMKTRPIMVKQMKY*FIKLRKGQELKLRAYAKKG 625
D E+K +PI +K+ F L+K +L L Y KKG
Sbjct: 121 DSEVKHQPIFIKERLKLFEILKKDHQLLLAIYGKKG 156
>AK056653-1|BAB71241.1| 707|Homo sapiens protein ( Homo sapiens
cDNA FLJ32091 fis, clone OCBBF2000824, moderately
similar to THREONYL-TRNA SYNTHETASE, CYTOPLASMIC (EC
6.1.1.3). ).
Length = 707
Score = 30.3 bits (65), Expect = 6.6
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 518 DIEMKTRPIMVKQMKY*FIKLRKGQELKLRAYAKKG 625
D E+K +PI +K+ F L+K +L L Y KKG
Sbjct: 121 DSEVKHQPIFIKERLKLFEILKKDHQLLLAIYGKKG 156
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,665,132
Number of Sequences: 237096
Number of extensions: 1958632
Number of successful extensions: 3709
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3700
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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