Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0056
(678 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY060644-1|AAL28192.1| 275|Drosophila melanogaster GH07456p pro... 166 3e-41
AJ133650-1|CAB38635.1| 275|Drosophila melanogaster RNA polymera... 166 3e-41
AE014134-2412|AAF53342.1| 275|Drosophila melanogaster CG7885-PA... 166 3e-41
AE014134-2413|AAN10853.1| 117|Drosophila melanogaster CG7885-PB... 83 4e-16
BT001794-1|AAN71549.1| 117|Drosophila melanogaster RH25219p pro... 80 2e-15
AY119625-1|AAM50279.1| 333|Drosophila melanogaster LP03982p pro... 40 0.003
AE014134-823|AAF52185.1| 333|Drosophila melanogaster CG3756-PA ... 40 0.003
>AY060644-1|AAL28192.1| 275|Drosophila melanogaster GH07456p
protein.
Length = 275
Score = 166 bits (403), Expect = 3e-41
Identities = 82/140 (58%), Positives = 103/140 (73%), Gaps = 1/140 (0%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVV++++Y+RDC+C+DFC ECSVEFTLDV
Sbjct: 46 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDV 105
Query: 436 KCTDEQTRHVTNC*FEIERS*SCPFTSRHRDEDQADYGEA-DEILIH*VTQGSGIEASGI 612
KC++EQTRHVT + + P TSR++ E+ +YGE+ DEILI + +G ++
Sbjct: 106 KCSEEQTRHVTTADLKSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAY 165
Query: 613 CQKRFWGKSMQNGIQLAGWC 672
+K F GK AG C
Sbjct: 166 AKKGF-GKEHAKWNPTAGVC 184
Score = 58.4 bits (135), Expect = 8e-09
Identities = 26/30 (86%), Positives = 29/30 (96%)
Frame = +3
Query: 123 MPYANQPSVHITELSDENVKFVVEDTELSV 212
MPYANQPSV ITEL+D+NVKFV+EDTELSV
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELSV 30
Score = 29.1 bits (62), Expect = 5.8
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +2
Query: 215 NSMRRVFIAETPT 253
NS+RRVFIAETPT
Sbjct: 32 NSLRRVFIAETPT 44
>AJ133650-1|CAB38635.1| 275|Drosophila melanogaster RNA polymerase
II p33 subunit protein.
Length = 275
Score = 166 bits (403), Expect = 3e-41
Identities = 82/140 (58%), Positives = 103/140 (73%), Gaps = 1/140 (0%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVV++++Y+RDC+C+DFC ECSVEFTLDV
Sbjct: 46 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDV 105
Query: 436 KCTDEQTRHVTNC*FEIERS*SCPFTSRHRDEDQADYGEA-DEILIH*VTQGSGIEASGI 612
KC++EQTRHVT + + P TSR++ E+ +YGE+ DEILI + +G ++
Sbjct: 106 KCSEEQTRHVTTADLKSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAY 165
Query: 613 CQKRFWGKSMQNGIQLAGWC 672
+K F GK AG C
Sbjct: 166 AKKGF-GKEHAKWNPTAGVC 184
Score = 58.4 bits (135), Expect = 8e-09
Identities = 26/30 (86%), Positives = 29/30 (96%)
Frame = +3
Query: 123 MPYANQPSVHITELSDENVKFVVEDTELSV 212
MPYANQPSV ITEL+D+NVKFV+EDTELSV
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELSV 30
Score = 29.1 bits (62), Expect = 5.8
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +2
Query: 215 NSMRRVFIAETPT 253
NS+RRVFIAETPT
Sbjct: 32 NSLRRVFIAETPT 44
>AE014134-2412|AAF53342.1| 275|Drosophila melanogaster CG7885-PA,
isoform A protein.
Length = 275
Score = 166 bits (403), Expect = 3e-41
Identities = 82/140 (58%), Positives = 103/140 (73%), Gaps = 1/140 (0%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVV++++Y+RDC+C+DFC ECSVEFTLDV
Sbjct: 46 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDV 105
Query: 436 KCTDEQTRHVTNC*FEIERS*SCPFTSRHRDEDQADYGEA-DEILIH*VTQGSGIEASGI 612
KC++EQTRHVT + + P TSR++ E+ +YGE+ DEILI + +G ++
Sbjct: 106 KCSEEQTRHVTTADLKSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAY 165
Query: 613 CQKRFWGKSMQNGIQLAGWC 672
+K F GK AG C
Sbjct: 166 AKKGF-GKEHAKWNPTAGVC 184
Score = 58.4 bits (135), Expect = 8e-09
Identities = 26/30 (86%), Positives = 29/30 (96%)
Frame = +3
Query: 123 MPYANQPSVHITELSDENVKFVVEDTELSV 212
MPYANQPSV ITEL+D+NVKFV+EDTELSV
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELSV 30
Score = 29.1 bits (62), Expect = 5.8
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +2
Query: 215 NSMRRVFIAETPT 253
NS+RRVFIAETPT
Sbjct: 32 NSLRRVFIAETPT 44
>AE014134-2413|AAN10853.1| 117|Drosophila melanogaster CG7885-PB,
isoform B protein.
Length = 117
Score = 82.6 bits (195), Expect = 4e-16
Identities = 37/42 (88%), Positives = 42/42 (100%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRD 381
AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVV++++Y+RD
Sbjct: 46 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYTRD 87
Score = 58.4 bits (135), Expect = 8e-09
Identities = 26/30 (86%), Positives = 29/30 (96%)
Frame = +3
Query: 123 MPYANQPSVHITELSDENVKFVVEDTELSV 212
MPYANQPSV ITEL+D+NVKFV+EDTELSV
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELSV 30
Score = 29.1 bits (62), Expect = 5.8
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +2
Query: 215 NSMRRVFIAETPT 253
NS+RRVFIAETPT
Sbjct: 32 NSLRRVFIAETPT 44
>BT001794-1|AAN71549.1| 117|Drosophila melanogaster RH25219p
protein.
Length = 117
Score = 80.2 bits (189), Expect = 2e-15
Identities = 36/41 (87%), Positives = 41/41 (100%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSR 378
AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVV++++Y+R
Sbjct: 46 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYTR 86
Score = 58.4 bits (135), Expect = 8e-09
Identities = 26/30 (86%), Positives = 29/30 (96%)
Frame = +3
Query: 123 MPYANQPSVHITELSDENVKFVVEDTELSV 212
MPYANQPSV ITEL+D+NVKFV+EDTELSV
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELSV 30
Score = 29.1 bits (62), Expect = 5.8
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +2
Query: 215 NSMRRVFIAETPT 253
NS+RRVFIAETPT
Sbjct: 32 NSLRRVFIAETPT 44
>AY119625-1|AAM50279.1| 333|Drosophila melanogaster LP03982p
protein.
Length = 333
Score = 39.9 bits (89), Expect = 0.003
Identities = 22/63 (34%), Positives = 37/63 (58%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AI+ V + N++++ DE LAHR+GL+PL +D + Y + + ++EF L V
Sbjct: 80 AIEKVYIYNNTSIIQDEVLAHRMGLLPLRADPRL--FAYRTEESTEAGTEQDTLEFELKV 137
Query: 436 KCT 444
KC+
Sbjct: 138 KCS 140
>AE014134-823|AAF52185.1| 333|Drosophila melanogaster CG3756-PA
protein.
Length = 333
Score = 39.9 bits (89), Expect = 0.003
Identities = 22/63 (34%), Positives = 37/63 (58%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AI+ V + N++++ DE LAHR+GL+PL +D + Y + + ++EF L V
Sbjct: 80 AIEKVYIYNNTSIIQDEVLAHRMGLLPLRADPRL--FAYRTEESTEAGTEQDTLEFELKV 137
Query: 436 KCT 444
KC+
Sbjct: 138 KCS 140
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,064,711
Number of Sequences: 53049
Number of extensions: 616739
Number of successful extensions: 1199
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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