Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0056
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80215-1|CAB02268.2|  282|Caenorhabditis elegans Hypothetical pr...   105   3e-23
AF125965-2|AAL38961.1|  366|Caenorhabditis elegans Hypothetical ...    34   0.081
AC024761-4|AAF59466.2|  332|Caenorhabditis elegans Hypothetical ...    29   3.0  
U23528-8|AAK31386.2|  293|Caenorhabditis elegans Hypothetical pr...    29   4.0  

>Z80215-1|CAB02268.2|  282|Caenorhabditis elegans Hypothetical
           protein C36B1.3 protein.
          Length = 282

 Score =  105 bits (252), Expect = 3e-23
 Identities = 54/130 (41%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
 Frame = +1

Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
           AIDWVQ+E N++VL DEF+AHR+GLIP ISD  V+K++Y+RDC C +FC ECS+ F L +
Sbjct: 46  AIDWVQIETNTSVLHDEFIAHRMGLIPFISDYHVEKMQYTRDCECAEFCDECSIPFILQM 105

Query: 436 KCTDEQTRHVTN------C*FEIERS*SCPFTSRHRDEDQADYGEADEILIH*VTQGSGI 597
           KC DE T  VT          +     +C    R R   + ++   +EILI  + +G  +
Sbjct: 106 KCKDEATLAVTTEHLMPMHNLDTTVRPACGKALRERGSTRDEFHNREEILIVKLRKGQEL 165

Query: 598 EASGICQKRF 627
                 +K F
Sbjct: 166 NLKAYVKKGF 175



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 18/30 (60%), Positives = 27/30 (90%)
 Frame = +3

Query: 123 MPYANQPSVHITELSDENVKFVVEDTELSV 212
           MPYANQP++ +TEL+++ +KFV+ DT+LSV
Sbjct: 1   MPYANQPNIEVTELTNDIIKFVLWDTDLSV 30



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/25 (68%), Positives = 20/25 (80%)
 Frame = +2

Query: 572 IKLRKGQELKLRAYAKKGFGERACK 646
           +KLRKGQEL L+AY KKGFG+   K
Sbjct: 157 VKLRKGQELNLKAYVKKGFGKEHAK 181



 Score = 31.9 bits (69), Expect = 0.43
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = +3

Query: 618 KKVLGKEHAKWNPT 659
           KK  GKEHAKWNPT
Sbjct: 172 KKGFGKEHAKWNPT 185


>AF125965-2|AAL38961.1|  366|Caenorhabditis elegans Hypothetical
           protein H43I07.2 protein.
          Length = 366

 Score = 34.3 bits (75), Expect = 0.081
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +1

Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISD 348
           A++ + L  N++V+ DE L HR+GL+PL  D
Sbjct: 95  ALEKIYLYQNTSVIQDEVLCHRLGLLPLRVD 125


>AC024761-4|AAF59466.2|  332|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.6 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 355 VDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTR 459
           +D  +Y+ D +C   CSEC         C D  TR
Sbjct: 79  IDNFKYNPDALCAGTCSECKTHTDKLRICVDCLTR 113


>U23528-8|AAK31386.2|  293|Caenorhabditis elegans Hypothetical
           protein B0034.5 protein.
          Length = 293

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 285 ISF*LYPIDGLVGVSAINTRLILFVRLIRYLPQRILHFHQIVLLC 151
           ISF +     L+ + +I+  ++LF+ LIR       +FH I+ LC
Sbjct: 11  ISFAIVIAGSLISIISISNNVLLFISLIRNNRCFKCYFHFILALC 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,674,340
Number of Sequences: 27780
Number of extensions: 326374
Number of successful extensions: 722
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)