Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0056
(678 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g15430.1 68415.m01765 DNA-directed RNA polymerase II 36 kDa p... 79 4e-15
At2g15400.1 68415.m01762 DNA-directed RNA polymerase II 36 kDa p... 66 3e-11
At1g60850.3 68414.m06850 DNA-directed RNA polymerase, putative i... 38 0.006
At1g60850.2 68414.m06849 DNA-directed RNA polymerase, putative i... 38 0.006
At1g60850.1 68414.m06848 DNA-directed RNA polymerase, putative i... 38 0.006
At1g60620.1 68414.m06824 DNA-directed RNA polymerase, putative i... 38 0.006
At1g55610.1 68414.m06365 protein kinase family protein contains ... 32 0.40
At3g13380.1 68416.m01683 leucine-rich repeat family protein / pr... 30 1.2
At1g17750.1 68414.m02197 leucine-rich repeat transmembrane prote... 29 2.1
At5g04550.1 68418.m00455 expressed protein contains Pfam domain ... 29 2.8
At3g06910.1 68416.m00820 Ulp1 protease family protein similar to... 28 4.9
At3g51330.1 68416.m05619 aspartyl protease family protein contai... 28 6.5
>At2g15430.1 68415.m01765 DNA-directed RNA polymerase II 36 kDa
polypeptide A / RNA polymerase II subunit 3 (RPB36A)
identical to SP|Q39211 DNA-directed RNA polymerase II 36
kDa polypeptide A (EC 2.7.7.6) (RNA polymerase II
subunit 3) {Arabidopsis thaliana}
Length = 319
Score = 78.6 bits (185), Expect = 4e-15
Identities = 40/75 (53%), Positives = 52/75 (69%), Gaps = 3/75 (4%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVD---FCSECSVEFT 426
AID V++E NS+VL+DEF+AHR+GLIPL S+ + +R+SRDC D C CSVEF
Sbjct: 49 AIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFR 107
Query: 427 LDVKCTDEQTRHVTN 471
L KC +QT VT+
Sbjct: 108 LSSKCVTDQTLDVTS 122
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/57 (42%), Positives = 32/57 (56%)
Frame = +2
Query: 476 DLKSSDPRVVPLHHDIEMKTRPIMVKQMKY*FIKLRKGQELKLRAYAKKGFGERACK 646
DL S+DP V P+ I+ + +KLR+GQELKLRA A+KG G+ K
Sbjct: 124 DLYSADPTVTPVDFTIDSSVSDSS-EHKGIIIVKLRRGQELKLRAIARKGIGKDHAK 179
>At2g15400.1 68415.m01762 DNA-directed RNA polymerase II 36 kDa
polypeptide B / RNA polymerase II subunit 3 (RPB36B)
identical to SP|Q39212 DNA-directed RNA polymerase II 36
kDa polypeptide B (EC 2.7.7.6) (RNA polymerase II
subunit 3) {Arabidopsis thaliana}
Length = 319
Score = 65.7 bits (153), Expect = 3e-11
Identities = 35/75 (46%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCM-C--VDFCSECSVEFT 426
AI V++E NS+VL+DEF+A R+ LIPL S+ + +R+ +DC C + C CSVEF
Sbjct: 49 AIHLVKIEVNSSVLNDEFIAQRLSLIPLTSERAM-SMRFCQDCEDCNGDEHCEFCSVEFP 107
Query: 427 LDVKCTDEQTRHVTN 471
L KC +QT VT+
Sbjct: 108 LSAKCVTDQTLDVTS 122
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/57 (40%), Positives = 30/57 (52%)
Frame = +2
Query: 476 DLKSSDPRVVPLHHDIEMKTRPIMVKQMKY*FIKLRKGQELKLRAYAKKGFGERACK 646
DL S+DP V P+ T + KLR+GQELKL+A A+KG G+ K
Sbjct: 124 DLYSADPTVTPVDFTSNSSTSDSS-EHKGIIIAKLRRGQELKLKALARKGIGKDHAK 179
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 612 MPKKVLGKEHAKWNPTGWV 668
+ +K +GK+HAKW+P V
Sbjct: 168 LARKGIGKDHAKWSPAATV 186
>At1g60850.3 68414.m06850 DNA-directed RNA polymerase, putative
identical to RNA polymerase subunit [Arabidopsis
thaliana] GI:514322; contains Pfam profile PF01000: RNA
polymerase Rpb3/RpoA insert domain
Length = 302
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/68 (33%), Positives = 37/68 (54%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AI+ V + N++V+ DE LAHR+GLIP+ +D + + D + ++ F L V
Sbjct: 113 AIEKVLIAYNTSVIIDEVLAHRMGLIPIAADPRLFEYLSEHD----QANEKNTIVFKLHV 168
Query: 436 KCTDEQTR 459
KC + R
Sbjct: 169 KCPKNRPR 176
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 524 EMKTRPIMVKQMKY*FIKLRKGQELKLRAYAKKGFGERACK 646
E PI + KL GQE++L A+A KG G+ K
Sbjct: 219 EFANNPITPCDLDILIAKLAPGQEIELEAHAVKGIGKTHAK 259
>At1g60850.2 68414.m06849 DNA-directed RNA polymerase, putative
identical to RNA polymerase subunit [Arabidopsis
thaliana] GI:514322; contains Pfam profile PF01000: RNA
polymerase Rpb3/RpoA insert domain
Length = 375
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/68 (33%), Positives = 37/68 (54%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AI+ V + N++V+ DE LAHR+GLIP+ +D + + D + ++ F L V
Sbjct: 113 AIEKVLIAYNTSVIIDEVLAHRMGLIPIAADPRLFEYLSEHD----QANEKNTIVFKLHV 168
Query: 436 KCTDEQTR 459
KC + R
Sbjct: 169 KCPKNRPR 176
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 524 EMKTRPIMVKQMKY*FIKLRKGQELKLRAYAKKGFGERACK 646
E PI + KL GQE++L A+A KG G+ K
Sbjct: 219 EFANNPITPCDLDILIAKLAPGQEIELEAHAVKGIGKTHAK 259
>At1g60850.1 68414.m06848 DNA-directed RNA polymerase, putative
identical to RNA polymerase subunit [Arabidopsis
thaliana] GI:514322; contains Pfam profile PF01000: RNA
polymerase Rpb3/RpoA insert domain
Length = 375
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/68 (33%), Positives = 37/68 (54%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 435
AI+ V + N++V+ DE LAHR+GLIP+ +D + + D + ++ F L V
Sbjct: 113 AIEKVLIAYNTSVIIDEVLAHRMGLIPIAADPRLFEYLSEHD----QANEKNTIVFKLHV 168
Query: 436 KCTDEQTR 459
KC + R
Sbjct: 169 KCPKNRPR 176
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 524 EMKTRPIMVKQMKY*FIKLRKGQELKLRAYAKKGFGERACK 646
E PI + KL GQE++L A+A KG G+ K
Sbjct: 219 EFANNPITPCDLDILIAKLAPGQEIELEAHAVKGIGKTHAK 259
>At1g60620.1 68414.m06824 DNA-directed RNA polymerase, putative
identical to RNA polymerase subunit [Arabidopsis
thaliana] GI:514324; contains Pfam profile PF01000: RNA
polymerase Rpb3/RpoA insert domain
Length = 385
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/31 (51%), Positives = 24/31 (77%)
Frame = +1
Query: 256 AIDWVQLEANSTVLSDEFLAHRIGLIPLISD 348
AI+ V + N++V+ DE LAHR+GLIP+ +D
Sbjct: 120 AIEKVYVANNTSVIQDEVLAHRLGLIPIAAD 150
>At1g55610.1 68414.m06365 protein kinase family protein contains
Prosite:PS00107: Protein kinases ATP-binding region
signature
Length = 1166
Score = 31.9 bits (69), Expect = 0.40
Identities = 24/72 (33%), Positives = 36/72 (50%)
Frame = -2
Query: 488 SISNQQLVTCLVCSSVHFTSNVNSTLHSEQKSTHMQSREYLILSTTSSDMSGMRPMRCAK 309
S++N + L SS FT NV S S Q S ++ + ++ +SG PM K
Sbjct: 370 SLTNCSNLRVLDLSSNGFTGNVPSGFCSLQSSPVLEK-----ILIANNYLSGTVPMELGK 424
Query: 308 NSSLKTVELASN 273
SLKT++L+ N
Sbjct: 425 CKSLKTIDLSFN 436
>At3g13380.1 68416.m01683 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 1164
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/72 (31%), Positives = 36/72 (50%)
Frame = -2
Query: 488 SISNQQLVTCLVCSSVHFTSNVNSTLHSEQKSTHMQSREYLILSTTSSDMSGMRPMRCAK 309
S++N + L SS FT V S S Q S+ ++ L ++ +SG P+ K
Sbjct: 370 SLTNCSNLRVLDLSSNEFTGEVPSGFCSLQSSSVLEK-----LLIANNYLSGTVPVELGK 424
Query: 308 NSSLKTVELASN 273
SLKT++L+ N
Sbjct: 425 CKSLKTIDLSFN 436
>At1g17750.1 68414.m02197 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor-like protein kinase
INRPK1 GI:1684913 from [Ipomoea nil]
Length = 1088
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = -2
Query: 452 CSSVHFTSNVNSTLHSEQKSTHMQSREYLILSTTSSDMSGMRPMRCAKNSSLKTVELASN 273
CSS+H V L S+ R+ ++ + + +SG P SSL+T++L N
Sbjct: 267 CSSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDLSDNRLSGNIPQELGNCSSLETLKLNDN 326
Query: 272 CTQ 264
Q
Sbjct: 327 QLQ 329
>At5g04550.1 68418.m00455 expressed protein contains Pfam domain
PF05003: protein of unknown function (DUF668)
Length = 599
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +1
Query: 265 WVQL-EANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKC 441
W L + N L DE + H G+ L+S+D +R RD M + + L KC
Sbjct: 44 WQSLSDKNVARLRDE-ITHSTGIKKLVSEDDDFIVRLIRDEMMENVENVAKAVARLARKC 102
Query: 442 TDEQTRHVTNC*FEIERS*SCPF 510
D + + NC ++ ++ + P+
Sbjct: 103 NDPKLKCFENCFSDMMKTGADPY 125
>At3g06910.1 68416.m00820 Ulp1 protease family protein similar to
sentrin/SUMO-specific protease [Homo sapiens]
GI:6906859; contains Pfam profile PF02902: Ulp1 protease
family, C-terminal catalytic domain
Length = 502
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 479 LKSSDPRVVPLHHDIEMKTRPIMVKQMKY*FIKLRKGQELKL 604
LK D +P+H +I I +K K+ ++ KG+E K+
Sbjct: 378 LKDCDKIFIPIHMNIHWTLAVINIKDQKFQYLDSFKGREPKI 419
>At3g51330.1 68416.m05619 aspartyl protease family protein contains
Eukaryotic and viral aspartyl proteases active site,
PROSITE:PS00141
Length = 529
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +1
Query: 433 VKCTDEQTRHVTNC*FEIERS*SCPFTSRHRDEDQADYGEADEILIH*VTQGSGIE 600
++C+D++ + C + SCP+ ++ +D G E ++H VT+ G+E
Sbjct: 165 IRCSDDRCFGSSRC---SSPASSCPYQIQYLSKDTFTTGTLFEDVLHLVTEDEGLE 217
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,524,414
Number of Sequences: 28952
Number of extensions: 292261
Number of successful extensions: 634
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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