Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0055
         (547 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000150A1E7 Cluster: Ubiquitin interaction motif fami...    35   1.1  
UniRef50_UPI00006A2562 Cluster: UPI00006A2562 related cluster; n...    33   4.3  
UniRef50_UPI00006A2561 Cluster: UPI00006A2561 related cluster; n...    33   4.3  

>UniRef50_UPI000150A1E7 Cluster: Ubiquitin interaction motif family
           protein; n=1; Tetrahymena thermophila SB210|Rep:
           Ubiquitin interaction motif family protein - Tetrahymena
           thermophila SB210
          Length = 762

 Score = 35.1 bits (77), Expect = 1.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 502 VIETENYPENSRKKSFYLFFFVYIYGRFHGLYNVKIPEK 386
           VI T + P    K     FF++ +  + HG YN+K+PEK
Sbjct: 101 VIFTFSNPYYKEKSDILKFFYILLEKKGHGQYNIKLPEK 139


>UniRef50_UPI00006A2562 Cluster: UPI00006A2562 related cluster; n=3;
           Xenopus tropicalis|Rep: UPI00006A2562 UniRef100 entry -
           Xenopus tropicalis
          Length = 563

 Score = 33.1 bits (72), Expect = 4.3
 Identities = 12/25 (48%), Positives = 20/25 (80%)
 Frame = +2

Query: 437 DEKKKVEALLSAILWIVFGLDNQFG 511
           +EK+ V+A+L A+ W+ FG D++FG
Sbjct: 98  EEKEYVDAILDAVQWLGFGWDSRFG 122


>UniRef50_UPI00006A2561 Cluster: UPI00006A2561 related cluster; n=2;
           Xenopus tropicalis|Rep: UPI00006A2561 UniRef100 entry -
           Xenopus tropicalis
          Length = 426

 Score = 33.1 bits (72), Expect = 4.3
 Identities = 12/25 (48%), Positives = 20/25 (80%)
 Frame = +2

Query: 437 DEKKKVEALLSAILWIVFGLDNQFG 511
           +EK+ V+A+L A+ W+ FG D++FG
Sbjct: 99  EEKEYVDAILDAVQWLGFGWDSRFG 123


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 500,869,557
Number of Sequences: 1657284
Number of extensions: 9112045
Number of successful extensions: 20397
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20393
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35405708495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)