Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0055
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    26   3.2  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   7.3  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   9.6  
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po...    25   9.6  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    25   9.6  

>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +1

Query: 283 KTSRYFFREILMPFN*DFDLISQILWTTFTL*CFFSLVS*HCIVHEIVRICRRKKKGRS 459
           KTS+  FR I +P   D D+    + TT      FSL    C + + ++ C+R + G S
Sbjct: 130 KTSQGHFRSIAVPSCSDQDMRQLYMATTIASLLDFSLSDPLCSI-QYIKSCQRYEGGFS 187


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 180  FDIVFFSIFLHIVTVVGIVDSTYSDSVGTQTLTSENLKVFL 302
            F  +   IF    T +GI  +T S S+GT ++ S    VF+
Sbjct: 1208 FAWLMLMIFTLYYTTLGIGIATISPSIGTASIISGTAFVFI 1248


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 541 EISNYKFLNIPELVIETENYP 479
           EI N  FLNIPE V  +  +P
Sbjct: 30  EIKNATFLNIPERVEHSLTFP 50


>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 368

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 403 HCIVHEIVRICRRKKKGRSSSF 468
           H + HEIV +  R  + R+SSF
Sbjct: 36  HKVQHEIVAVATRDSEHRASSF 57


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 514 IPELVIE-TENYPENSRKKSFYLFFFVYIYGRFHGLYNVKIPE 389
           I +++IE T+  P+  +K S  +F    + G  HG  N+KI E
Sbjct: 505 ISDVIIEATQAEPKRRQKNSRVVFDEEDLTGDSHGSSNMKISE 547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,099
Number of Sequences: 5004
Number of extensions: 40852
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)