Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0055
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0889 + 8753877-8754236,8754995-8755054,8755174-8755250,875...    27   7.4  
05_01_0387 + 3031225-3031313,3033752-3033820,3033947-3034220,303...    27   9.8  
03_01_0467 + 3608250-3608541,3609276-3609356,3609909-3610069           27   9.8  
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081...    27   9.8  

>08_01_0889 +
           8753877-8754236,8754995-8755054,8755174-8755250,
           8755481-8755622,8755736-8755772,8755852-8755921,
           8756021-8756212,8756321-8756413,8756545-8756773,
           8756861-8756944,8757041-8757192,8757279-8757375,
           8757576-8757725,8757813-8757890,8757982-8758104,
           8758169-8758315,8758418-8758472,8758807-8758874
          Length = 737

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 529 YKFLNIPELVIETENYPENSRKKSFYLFFFVYIYG 425
           +K +++ E  +E E Y E  +K+   L FFV  YG
Sbjct: 135 FKVVDLDEYAMEDEEYEERLKKEKISL-FFVATYG 168


>05_01_0387 +
           3031225-3031313,3033752-3033820,3033947-3034220,
           3034310-3034339,3034491-3034634
          Length = 201

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +2

Query: 368 SHYNVFFLWYLNIV*SMKSSVYVDEKKKVEALLSAILWIVFGLDNQFGYIQ 520
           S+ N  F W  N+   M+  +   +   +E   SA+LW     D+ FG  Q
Sbjct: 63  SYPNHDFEWKHNVEPVMQVYIETTDGSSIEPKESALLWHYLDADHDFGSCQ 113


>03_01_0467 + 3608250-3608541,3609276-3609356,3609909-3610069
          Length = 177

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 12  VTLLGCIHT*RTTRGAPAADCCGRMQQPFPRSIPFAC 122
           V L  C+   +    APA DCCG ++Q   +S    C
Sbjct: 23  VGLAPCLQYVQGEAKAPAPDCCGGLRQVLGKSPKCLC 59


>01_06_0556 + 30207124-30207581,30207692-30207901,30208016-30208100,
            30208517-30208676,30208768-30208844,30208985-30209032,
            30209504-30209594,30209703-30210004,30210214-30210495,
            30210695-30211011,30211113-30211273,30211556-30211665,
            30211752-30211902,30212438-30212578,30212688-30212857,
            30213485-30213817,30213981-30214271,30214356-30214439,
            30214620-30214753,30214946-30215173,30215273-30215444,
            30215621-30215875,30215963-30216232
          Length = 1509

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 457  FYLFFFVYIYGRFHGLYNVKI 395
            FY+ FF ++Y  ++G+ NV +
Sbjct: 1371 FYVSFFTFLYFTYYGMMNVSV 1391


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,005,529
Number of Sequences: 37544
Number of extensions: 231793
Number of successful extensions: 526
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)