Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0055
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81061-7|CAB02939.2|  819|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z81046-2|CAB02824.1|  295|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z78413-11|CAB01667.2|  819|Caenorhabditis elegans Hypothetical p...    27   8.8  
U64598-12|AAX88835.1|  408|Caenorhabditis elegans Choline kinase...    27   8.8  
U64598-11|AAK39220.1|  429|Caenorhabditis elegans Choline kinase...    27   8.8  
AF318614-1|AAK01102.1|  433|Caenorhabditis elegans ionotropic gl...    27   8.8  

>Z81061-7|CAB02939.2|  819|Caenorhabditis elegans Hypothetical
           protein T01C3.10 protein.
          Length = 819

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 335 STSFRKYCGRHSHYNVFFLWYLNIV*SMKSSVYVDEKKKVEALLSAILWIVFGL 496
           S + +KY      +++F  ++L       +SV  D  K   + L A++W  FGL
Sbjct: 473 SFNMQKYPPPEHKFSLFRSYWLVWATLFSASVSTDVPKSTVSRLMALVWAAFGL 526


>Z81046-2|CAB02824.1|  295|Caenorhabditis elegans Hypothetical
           protein C37E2.3 protein.
          Length = 295

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -1

Query: 535 SNYKFLNIPEL-VIETENYPENSRKKSFYLFFFVYIYGRFHGLYNVKI 395
           S Y F+ I  L  I   NY ++   K  Y+F  V +   F  LY+V +
Sbjct: 5   SQYLFIVIAILWAIALYNYGDSPDSKELYIFRIVKLTNIFGALYSVSV 52


>Z78413-11|CAB01667.2|  819|Caenorhabditis elegans Hypothetical
           protein T01C3.10 protein.
          Length = 819

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 335 STSFRKYCGRHSHYNVFFLWYLNIV*SMKSSVYVDEKKKVEALLSAILWIVFGL 496
           S + +KY      +++F  ++L       +SV  D  K   + L A++W  FGL
Sbjct: 473 SFNMQKYPPPEHKFSLFRSYWLVWATLFSASVSTDVPKSTVSRLMALVWAAFGL 526


>U64598-12|AAX88835.1|  408|Caenorhabditis elegans Choline kinase a
           protein 2, isoformb protein.
          Length = 408

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 532 NYKFLNIPELVIETENYPENSRKKSFYL 449
           +Y     P   I+TEN+PEN +   F+L
Sbjct: 303 DYDIDEAPFYKIQTENFPENDQMLEFFL 330


>U64598-11|AAK39220.1|  429|Caenorhabditis elegans Choline kinase a
           protein 2, isoforma protein.
          Length = 429

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 532 NYKFLNIPELVIETENYPENSRKKSFYL 449
           +Y     P   I+TEN+PEN +   F+L
Sbjct: 324 DYDIDEAPFYKIQTENFPENDQMLEFFL 351


>AF318614-1|AAK01102.1|  433|Caenorhabditis elegans ionotropic
           glutamate receptor NMR-2 protein.
          Length = 433

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 335 STSFRKYCGRHSHYNVFFLWYLNIV*SMKSSVYVDEKKKVEALLSAILWIVFGL 496
           S + +KY      +++F  ++L       +SV  D  K   + L A++W  FGL
Sbjct: 180 SFNMQKYPPPEHKFSLFRSYWLVWATLFSASVSTDVPKSTVSRLMALVWAAFGL 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,663,966
Number of Sequences: 27780
Number of extensions: 222318
Number of successful extensions: 474
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)