Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0055
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   1.5  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   1.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.7  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   3.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   3.5  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   3.5  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   6.2  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 372 CECRPQYLRNEVEVLIKR 319
           C CR  YLRN+ +V + R
Sbjct: 71  CVCRLGYLRNKKKVCVPR 88


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 372 CECRPQYLRNEVEVLIKR 319
           C CR  YLRN+ +V + R
Sbjct: 71  CVCRLGYLRNKKKVCVPR 88


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 38  MTNDSXGTGGRLLRP 82
           + +D  G GGRLL+P
Sbjct: 97  VVSDKTGNGGRLLQP 111


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 526 KFLNIPELVIETENYPENSRKKSFY 452
           K L  PE +I     PE  R K F+
Sbjct: 598 KMLGFPERLILPRGKPEGMRYKMFF 622


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 526 KFLNIPELVIETENYPENSRKKSFY 452
           K L  PE +I     PE  R K F+
Sbjct: 598 KMLGFPERLILPRGKPEGMRYKMFF 622


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 413 SMKSSVYVDEKKKVEALLSAILWIVFGLDNQFG 511
           S+K+ V +  K  V+ +L  + +  FG    FG
Sbjct: 57  SLKNEVNIMMKNVVDIVLGGLTYWAFGFAMSFG 89


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 267 QTLTSENLKVFL 302
           QTLTSEN+++ L
Sbjct: 116 QTLTSENVEILL 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,450
Number of Sequences: 438
Number of extensions: 3120
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)