Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0055
         (547 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73560.1 68414.m08515 protease inhibitor/seed storage/lipid t...    29   2.0  
At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-g...    27   8.2  
At2g18670.1 68415.m02175 zinc finger (C3HC4-type RING finger) fa...    27   8.2  

>At1g73560.1 68414.m08515 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           GI:2627141 from (Picea abies) (Plant Mol. Biol. 42 (3),
           461-478 (2000)); contains Pfam protease inhibitor/seed
           storage/LTP family domain PF00234
          Length = 147

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 18  LLGCIHT*RTTRGAPAADCCGRMQQPFPRSIPFACXAFSEP 140
           LL C     +    P   CCG M++   +  P  C AF+ P
Sbjct: 37  LLPCQPYIHSLNPPPPPSCCGPMKEIVEKDAPCLCIAFNNP 77


>At3g28390.1 68416.m03547 P-glycoprotein, putative similar to
           P-glycoprotein homologue GI:2292907 from [Hordeum
           vulgare subsp. vulgare]
          Length = 1225

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 183 DIVFFSIFLHIVTVVGIVDSTYSDSVGTQTLTSENLKVFL*GNINAF 323
           D+ +F   LH+ +   ++ S  SDS+  Q   SE L  FL  N +AF
Sbjct: 113 DVGYFD--LHVTSTSDVITSVSSDSLVIQDFLSEKLPNFL-MNTSAF 156


>At2g18670.1 68415.m02175 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 181

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 132 SEPXYRPNT**LPRFVFDIVFFSIFLHIVTVVGI 233
           S P  +P T  L  F+  ++ FSIF   + ++GI
Sbjct: 19  SHPPPKPKTRILSLFLVGVIMFSIFFLFLVLIGI 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,885,809
Number of Sequences: 28952
Number of extensions: 201339
Number of successful extensions: 454
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)